RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SEMA6AQ9H2E6 1030 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 L2HGDHQ9H9P8 463 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 TMEM138Q9NPI0 162 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 SEMA4BQ9NPR2 832 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 INTS7Q9NVH2 962 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 NINJ2Q9NZG7 142 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 IKZF3Q9UKT9 509 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 C1QTNF3-AMACRE9PGA6 284 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 APOC4-APOC2K7ER74 178 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 APOC2P02655 101 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 TTPAP49638 278 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 PSEN2P49810 448 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 RBBP4Q09028 425 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 AKIRIN2Q53H80 203 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 CXXC5Q7LFL8 322 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 PRMT6Q96LA8 375 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 SEMA4AQ9H3S1 761 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 DSN1Q9H410 356 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 MCM8Q9UJA3 840 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 BCORL1Q5H9F3 1711 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 TBC1D3BA6NDS4 549 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 UGT2B15P54855 530 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 MYBPC1Q00872 1141 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 KCNT2Q6UVM3 1135 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 BRSK2Q8IWQ3 736 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 ELL3Q9HB65 397 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 EIF4BP23588 611 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 OMPP47874 163 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 BCAP31P51572 246 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 PFKFB4Q16877 469 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 REXO5Q96IC2 774 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 QKIQ96PU8 341 aaKnown RBP eCLIP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 TTLL2Q9BWV7 592 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 ATP13A3Q9H7F0 1226 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 ETNK2Q9NVF9 386 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 TNFSF13BQ9Y275 285 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 MTF2Q9Y483 593 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 OR10H1Q9Y4A9 318 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 GPSM3Q9Y4H4 160 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 GTPBP1O00178 669 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 PRKAG1P54619 331 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 TGFB2P61812 414 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 CES5AQ6NT32 575 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 DET1Q7L5Y6 550 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 SORCS3Q9UPU3 1222 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 DYTNA2CJ06 578 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 TAF4O00268 1085 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 UGT1A5P35504 534 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 DPYSL3Q14195 570 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 PYDC2Q56P42 97 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 CES3Q6UWW8 571 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC41A1Q8IVJ1 513 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 OFCC1Q8IZS5 231 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 RP9Q8TA86 221 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 PPP3R2Q96LZ3 170 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 DDX18Q9NVP1 670 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 RGL2O15211 777 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 CCNYL3P0C7X3 344 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 BDNFP23560 247 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 C9orf131Q5VYM1 1079 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 KATNAL2Q8IYT4 538 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 FBXO30Q8TB52 745 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 ADAM32Q8TC27 787 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 MLPHQ9BV36 600 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 TOR4AQ9NXH8 423 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 MARCH2Q9P0N8 246 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 PTGFRNQ9P2B2 879 aa12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF214Q9UL59 606 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-204ENST00000389857 SSTR1P30872 391 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ALDH5A1P51649 535 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ST3GAL1Q11201 340 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 SMCO1Q147U7 214 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 PTGES3Q15185 160 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 BROXQ5VW32 411 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 NET1Q7Z628 596 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 OR7A2PQ8NGA2 310 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC5A5Q92911 643 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 VPS35Q96QK1 796 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNHIT2Q9UHR6 403 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ERGIC3Q9Y282 383 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 A8MX80 341 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ACKR2O00590 384 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 GLI1P08151 1106 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 BMP7P18075 431 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ACLYP53396 1101 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 IRF8Q02556 426 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 SENP6Q9GZR1 1112 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 PIH1D1Q9NWS0 290 aaKnown RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 RAB23Q9ULC3 237 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 MKL2Q9ULH7 1088 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 IDH3BO43837 385 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 CCNDBP1O95273 360 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 NOS2P35228 1153 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 PUDPQ08623 228 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 FAAP100Q0VG06 881 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 CD101Q93033 1021 aa12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF184Q99676 751 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 LEF1Q9UJU2 399 aaPredicted RBP12.92□□□□□ -0.34
CCDC88C-204ENST00000389857 FAM50BQ9Y247 325 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms