RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CFAP36Q96G28 342 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 SLC46A2Q9BY10 475 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 DNMT3BQ9UBC3 853 aaKnown RBP18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 ARL2BPQ9Y2Y0 163 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 HCFC2Q9Y5Z7 792 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 F5H423 210 aaPredicted RBP18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 POC1B-GALNT4F8VUJ3 575 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 LEFTY2O00292 366 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 KDELR3O43731 214 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 TSPAN3O60637 253 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 TBL1XO60907 577 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 AVILO75366 819 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 ASMTLO95671 621 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 HLA-DQB2P05538 268 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CREB1P16220 341 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 PGAM1P18669 254 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CDH18Q13634 790 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CAPN12Q6ZSI9 719 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 TRPM8Q7Z2W7 1104 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 GSDMBQ8TAX9 411 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 MGARPQ8TDB4 240 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 ADAMTS19Q8TE59 1207 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 SIGLEC10Q96LC7 697 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 SPON2Q9BUD6 331 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 FSD1LQ9BXM9 530 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 PBX4Q9BYU1 374 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 POLR1EQ9GZS1 481 aaKnown RBP18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 IL22Q9GZX6 179 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 MUC3BQ9H195 1237 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 ATP13A1Q9HD20 1204 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CASS4Q9NQ75 786 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 HCFC1R1Q9NWW0 138 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 SEPT3Q9UH03 358 aa18.49■□□□□ 0.55
CCDC88C-203ENST00000389856 CHD5Q8TDI0 1954 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 BANF1O75531 89 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 LUC7L3O95232 432 aaKnown RBP18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 CES1P23141 567 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 SSTR1P30872 391 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 SCTRP47872 440 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 ITKQ08881 620 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 LRRC14Q15048 493 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 TEAD2Q15562 447 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 DUSP6Q16828 381 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 CYS1Q717R9 158 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 SPATA21Q7Z572 469 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 PACS2Q86VP3 889 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 TDRD5Q8NAT2 981 aaKnown RBP18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 FBF1Q8TES7 1133 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 ARNTL2Q8WYA1 636 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 MLPHQ9BV36 600 aaPredicted RBP18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 NKX2-4Q9H2Z4 354 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 SFXN1Q9H9B4 322 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 NT5MQ9NPB1 228 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 TBC1D14Q9P2M4 693 aa18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 UBA2Q9UBT2 640 aaPredicted RBP18.48■□□□□ 0.55
CCDC88C-203ENST00000389856 CCDC195A0A1B0GUA6 201 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 J3KR12 359 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 GREM1O60565 184 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 PEX11BO96011 259 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 POLBP06746 335 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 MSH2P43246 934 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 SESN2P58004 480 aaPredicted RBP18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 PPARDQ03181 441 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 SLC14A2Q15849 920 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 SPRED2Q7Z698 418 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 CARNMT1Q8N4J0 409 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 KIAA1958Q8N8K9 716 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 DDI1Q8WTU0 396 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 CDKL2Q92772 493 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 MYEOVQ96EZ4 313 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 IMP4Q96G21 291 aaKnown RBP18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 GDF15Q99988 308 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 TBL1YQ9BQ87 522 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 KIF9Q9HAQ2 790 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 FGFR1OP2Q9NVK5 253 aa18.47■□□□□ 0.55
CCDC88C-203ENST00000389856 IQANK1A0A1B0GTG1 560 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 SLC9A3R1O14745 358 aaPredicted RBP18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 PER2O15055 1255 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 TM9SF1O15321 606 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 FAM155BO75949 473 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 TCF3P15923 654 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 GJA1P17302 382 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 TAC1P20366 129 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 ACVRL1P37023 503 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 NAB1Q13506 487 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 LGSNQ5TDP6 509 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 RNF219Q5W0B1 726 aaPredicted RBP18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 RNF43Q68DV7 783 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 ZNF449Q6P9G9 518 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 OTOP3Q7RTS5 596 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 RBM23Q86U06 439 aaKnown RBP18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 SH3RF2Q8TEC5 729 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 SMG7Q92540 1137 aaKnown RBP18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 CINPQ9BW66 212 aaPredicted RBP18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 ACE2Q9BYF1 805 aaPredicted RBP18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 TDP1Q9NUW8 608 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 PRKAG3Q9UGI9 489 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 SLC12A4Q9UP95 1085 aa18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 MRPS23Q9Y3D9 190 aaKnown RBP18.46■□□□□ 0.55
CCDC88C-203ENST00000389856 STARD13Q9Y3M8 1113 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms