RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PLPP6Q8IY26 295 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 KDF1Q8NAX2 398 aaPredicted RBP22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 PPP1R16AQ96I34 528 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 ERVMER34-1Q9H9K5 563 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 TOR4AQ9NXH8 423 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 AIPL1Q9NZN9 384 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 FZD10Q9ULW2 581 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 A0A1W2PQU0 124 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 PRAMEF26H0Y7S4 382 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 YKT6O15498 198 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 DKK1O94907 266 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 ATXN1LP0C7T5 689 aaKnown RBP22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 DNA2P51530 1060 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 CCNHP51946 323 aaPredicted RBP22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 OGDHQ02218 1023 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 STAT4Q14765 748 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 NR1I3Q14994 352 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 POLD3Q15054 466 aaPredicted RBP22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 INAVAQ3KP66 663 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 HORMAD1Q86X24 394 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 RTL3Q8N8U3 475 aaKnown RBP22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 HAUS4Q9H6D7 363 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 HPCAL4Q9UM19 191 aa22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 KMT2BQ9UMN6 2715 aaPredicted RBP22.11■■□□□ 1.13
CCDC28B-201ENST00000373602 DOCK9Q9BZ29 2069 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 TMEM8BA6NDV4 472 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 TMCO5BA8MYB1 307 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 TNFSF14O43557 240 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 KDELR3O43731 214 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 MAGEC1O60732 1142 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 KRT37O76014 449 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 ITGB7P26010 798 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 EPHB2P29323 1055 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 PRKCIP41743 596 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 MAMLD1Q13495 774 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 SFMBT2Q5VUG0 894 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 E4F1Q66K89 784 aaPredicted RBP22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 PLEKHA7Q6IQ23 1121 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 SPATS2Q86XZ4 545 aaKnown RBP22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 GATAD2AQ86YP4 633 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 OXR1Q8N573 874 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 TMEM145Q8NBT3 493 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 SAP25Q8TEE9 199 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 EPAS1Q99814 870 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 EDEM3Q9BZQ6 932 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 TTYH3Q9C0H2 523 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 NOL6Q9H6R4 1146 aaKnown RBP22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 PARVAQ9NVD7 372 aa22.1■■□□□ 1.13
CCDC28B-201ENST00000373602 GSRP00390 522 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 GZMAP12544 262 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 EPHA8P29322 1005 aaPredicted RBP22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 RXRGP48443 463 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 ARRB1P49407 418 aaPredicted RBP22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 NEK3P51956 506 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 KLHL40Q2TBA0 621 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 ZNF284Q2VY69 593 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 ZNF571Q7Z3V5 609 aaPredicted RBP22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 TMC6Q7Z403 805 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 TM6SF2Q9BZW4 377 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 CA5BQ9Y2D0 317 aa22.09■■□□□ 1.13
CCDC28B-201ENST00000373602 USP24Q9UPU5 2620 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 ZSCAN5CA6NGD5 496 aaPredicted RBP22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 WASH4PA8MWX3 477 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 SLC31A1O15431 190 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 CREB3O43889 395 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 PCDH8O95206 1070 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 SERPINC1P01008 464 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 ITGAVP06756 1048 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 ADRB3P13945 408 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 DESP17661 470 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 YBEYP58557 167 aaPredicted RBP22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 OR2AP1Q8NGE2 309 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 KLK6Q92876 244 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 LRIG1Q96JA1 1093 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 ZDHHC6Q9H6R6 413 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 CATSPERBQ9H7T0 1116 aa22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 ZFR2Q9UPR6 939 aaKnown RBP22.08■■□□□ 1.13
CCDC28B-201ENST00000373602 SYCE3A1L190 88 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 ATMINO43313 823 aaPredicted RBP22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 PRLRP16471 622 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 PSMA2P25787 234 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 SNRPD1P62314 119 aaKnown RBP22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 TMEM259Q4ZIN3 620 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 FIGNQ5HY92 759 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 FBXL19Q6PCT2 694 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 LEKR1Q6ZMV7 388 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 VOPP1Q96AW1 172 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 KLHDC7BQ96G42 594 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 CBX8Q9HC52 389 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 FTSJ1Q9UET6 329 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 FADS3Q9Y5Q0 445 aa22.07■■□□□ 1.12
CCDC28B-201ENST00000373602 TMEM191CA6NGB0 347 aa22.06■■□□□ 1.12
CCDC28B-201ENST00000373602 GOLGA8CPA6NN73 597 aa22.06■■□□□ 1.12
CCDC28B-201ENST00000373602 RASA4BC9J798 803 aa22.06■■□□□ 1.12
CCDC28B-201ENST00000373602 DDX3XO00571 662 aaKnown RBP eCLIP22.06■■□□□ 1.126e-7■■□□□ 14.3
CCDC28B-201ENST00000373602 RASA4O43374 803 aa22.06■■□□□ 1.12
CCDC28B-201ENST00000373602 BUB1O43683 1085 aa22.06■■□□□ 1.12
CCDC28B-201ENST00000373602 AP1G1O43747 822 aa22.06■■□□□ 1.12
CCDC28B-201ENST00000373602 FTLP02792 175 aaPredicted RBP22.06■■□□□ 1.12
CCDC28B-201ENST00000373602 HNRNPA2B1P22626 353 aaKnown RBP22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms