RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 LTB4R2Q9NPC1 389 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 THAP10Q9P2Z0 257 aaPredicted RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 DMGDHQ9UI17 866 aaKnown RBP4.1□□□□□ -1.75
LIG4-201ENST00000356922 FBXL21Q9UKT6 434 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 HS3ST2Q9Y278 367 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 PCDHGC4Q9Y5F7 938 aa4.1□□□□□ -1.75
LIG4-201ENST00000356922 FRYQ5TBA9 3013 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 GOLGA8CPA6NN73 597 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 H7C0C1 242 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 PGRMC1O00264 195 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 TTI1O43156 1089 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 GPR37L1O60883 481 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 SIN3BO75182 1162 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 USP12O75317 370 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 PIGNO95427 931 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 PRLP01236 227 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 POLR2EP19388 210 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 RPL22P35268 128 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 ATP5OP48047 213 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 SERPINH1P50454 418 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 COPAP53621 1224 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 NR1H3Q13133 447 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 TFDP2Q14188 446 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 SPARCL1Q14515 664 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 CCNG2Q16589 344 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 CYP1B1Q16678 543 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 PARP15Q460N3 678 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 ACCSLQ4AC99 568 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 SLC45A4Q5BKX6 768 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 UBAP2Q5T6F2 1119 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 TTC39BQ5VTQ0 682 aaPredicted RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 CCDC137Q6PK04 289 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 CAMK1DQ8IU85 385 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 CHPFQ8IZ52 775 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 MAML2Q8IZL2 1156 aaPredicted RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 AHI1Q8N157 1196 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 AGGF1Q8N302 714 aaeCLIP4.09□□□□□ -1.75
LIG4-201ENST00000356922 TEX26Q8N6G2 289 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 TMEM105Q8N8V8 129 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 DCAF4L2Q8NA75 395 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 KIF18AQ8NI77 898 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 HTR3CQ8WXA8 447 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 NKD2Q969F2 451 aaPredicted RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 MAGOHBQ96A72 148 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 KRT12Q99456 494 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 TRIM56Q9BRZ2 755 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 TRIM51Q9BSJ1 452 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 LRRC1Q9BTT6 524 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 SLC2A11Q9BYW1 496 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 L2HGDHQ9H9P8 463 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 NT5MQ9NPB1 228 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 PRSS16Q9NQE7 514 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 RBM22Q9NW64 420 aaKnown RBP eCLIP4.09□□□□□ -1.75
LIG4-201ENST00000356922 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.09□□□□□ -1.75
LIG4-201ENST00000356922 EVLQ9UI08 416 aaPredicted RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 TTLL3Q9Y4R7 772 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 STON1Q9Y6Q2 735 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 V9GYY5 206 aaPredicted RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 ESYT3A0FGR9 886 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 KLF8O95600 359 aaPredicted RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 IFNB1P01574 187 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 TGM2P21980 687 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 CCNCP24863 283 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 COILP38432 576 aaPredicted RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 CHRNA4P43681 627 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 SCNN1BP51168 640 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 OXCT1P55809 520 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 LBRQ14739 615 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 TEX44Q53QW1 395 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 SEL1L2Q5TEA6 688 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 ANKRD22Q5VYY1 191 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 DARS2Q6PI48 645 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 ZNF852Q6ZMS4 543 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 STK40Q8N2I9 435 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 ATPAF2Q8N5M1 289 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 TFB1MQ8WVM0 346 aaKnown RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 TEKT5Q96M29 485 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 QKIQ96PU8 341 aaKnown RBP eCLIP4.09□□□□□ -1.75
LIG4-201ENST00000356922 RBM15Q96T37 977 aaKnown RBP eCLIP4.09□□□□□ -1.75
LIG4-201ENST00000356922 MLPHQ9BV36 600 aaPredicted RBP4.09□□□□□ -1.75
LIG4-201ENST00000356922 EBF1Q9UH73 591 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 ZNF148Q9UQR1 794 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 WASF2Q9Y6W5 498 aa4.09□□□□□ -1.75
LIG4-201ENST00000356922 BCLAF3A2AJT9 711 aaKnown RBP4.09□□□□□ -1.76
LIG4-201ENST00000356922 A8MX80 341 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 CES2O00748 559 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 RAD51CO43502 376 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 DCXO43602 365 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 ATP9BO43861 1147 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 AVILO75366 819 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 EPHX1P07099 455 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 SLC8A1P32418 973 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 HTR7P34969 479 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 EIF2DP41214 584 aaKnown RBP4.09□□□□□ -1.76
LIG4-201ENST00000356922 NR2C2P49116 596 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 PFKPQ01813 784 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 IL10RBQ08334 325 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 ANKRD20A2Q5SQ80 823 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 ANKRD20A1Q5TYW2 823 aa4.09□□□□□ -1.76
LIG4-201ENST00000356922 ANKRD20A3Q5VUR7 823 aa4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms