RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ADGRE3Q9BY15 652 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 TSPAN19P0C672 248 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 RTP1P59025 263 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 SPIRE1Q08AE8 756 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 ARHGEF6Q15052 776 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 LLGL2Q6P1M3 1020 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 KIAA0408Q6ZU52 694 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 NACC2Q96BF6 587 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 MRPL42Q9Y6G3 142 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 C5orf60A6NFR6 353 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 TRUB2O95900 331 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 DSG3P32926 999 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 CCR3P51677 355 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 ATP12AP54707 1039 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 PACS1Q6VY07 963 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 ARMC7Q9H6L4 198 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 PRRG1O14668 218 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 RTN3O95197 1032 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 ALOX5P09917 674 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 HOXB8P17481 243 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 TFEBP19484 476 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 KBTBD8Q8NFY9 601 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 MIEF1Q9NQG6 463 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 CRNNQ9UBG3 495 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 TRPC4Q9UBN4 977 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 SLC12A4Q9UP95 1085 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 TGDSO95455 350 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 CYP3A4P08684 503 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 S100A1P23297 94 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 PCID2Q5JVF3 399 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 DENND5AQ6IQ26 1287 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 LPCAT1Q8NF37 534 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 WDR12Q9GZL7 423 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 TAS2R1Q9NYW7 299 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 ATP6V1HQ9UI12 483 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 PIK3C2AO00443 1686 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 SLC12A8A0AV02 714 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 LSM1O15116 133 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 TUBP50607 506 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 SRP54P61011 504 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 USP39Q53GS9 565 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 CYP4Z2PQ8N1L4 340 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 PROX1Q92786 737 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 TNFRSF25Q93038 417 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 COX4I2Q96KJ9 171 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 CAMKK2Q96RR4 588 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 UBXN6Q9BZV1 441 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 SH3BP1Q9Y3L3 701 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 CABYRO75952 493 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 DPEP1P16444 411 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 FASTKD3Q14CZ7 662 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 ELMSAN1Q6PJG2 1045 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 NEK10Q6ZWH5 1172 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 C2orf69Q8N8R5 385 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 FGFBP2Q9BYJ0 223 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 PRDM12Q9H4Q4 367 aa19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 MRPL39Q9NYK5 338 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-202ENST00000356786 KNDC1Q76NI1 1749 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 LACTBL1A8MY62 500 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 CBX4O00257 560 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 ACKR2O00590 384 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 PSMD10O75832 226 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 KCNH1O95259 989 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 RFX3P48380 749 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 CENPAP49450 140 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 FUT2Q10981 343 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 PLCL1Q15111 1095 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 SATL1Q86VE3 508 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 HERC6Q8IVU3 1022 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 LZTR1Q8N653 840 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 TIMM13Q9Y5L4 95 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 MAGP20916 626 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 TRAP1Q12931 704 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 ECM1Q16610 540 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 BMT2Q1RMZ1 405 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 MAB21L3Q8N8X9 362 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 NARS2Q96I59 477 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 C7orf26Q96N11 449 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 ZFYVE28Q9HCC9 887 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 KLHL1Q9NR64 748 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 PTTG2Q9NZH5 202 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 RAB26Q9ULW5 256 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 COG5Q9UP83 839 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 RGS14O43566 566 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 RAMP2O60895 175 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 LHX1P48742 406 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 FAM187BQ17R55 369 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 ACSBG2Q5FVE4 666 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 RFWD3Q6PCD5 774 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 NIPA1Q7RTP0 329 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 GPSM1Q86YR5 675 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 STAG3L4Q8TBR4 150 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 SYT15Q9BQS2 421 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 IKZF4Q9H2S9 585 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 DDX43Q9NXZ2 648 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 SNTG2Q9NY99 539 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 RNF181Q9P0P0 153 aa19.74■□□□□ 0.75
CCDC88B-202ENST00000356786 SIN3BO75182 1162 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 TSPAN9O75954 239 aa19.73■□□□□ 0.75
CCDC88B-202ENST00000356786 FMO4P31512 558 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms