RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 NPY6RQ99463 290 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MSTO1Q9BUK6 570 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 C1QTNF1Q9BXJ1 281 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 IMPG2Q9BZV3 1241 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ZNF385DQ9H6B1 395 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 PLEKHA5Q9HAU0 1116 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 POPDC2Q9HBU9 364 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ARFGAP3Q9NP61 516 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SETD4Q9NVD3 440 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ERAP1Q9NZ08 941 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP2.4□□□□□ -2.03
VPS54-202ENST00000354504 ITGA11Q9UKX5 1188 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 FZD10Q9ULW2 581 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 AGAP1Q9UPQ3 857 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 HES2Q9Y543 173 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SF3B1O75533 1304 aaKnown RBP eCLIP2.4□□□□□ -2.032e-21■■■■■ 124.1
VPS54-202ENST00000354504 CXorf49A8MYA2 514 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 TMCO5BA8MYB1 307 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 H3BNC9 293 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 PES1O00541 588 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 DNALI1O14645 258 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 HNRNPDLO14979 420 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 ALOX15BO15296 676 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SNRNP200O75643 2136 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 KIF20AO95235 890 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CD160O95971 181 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 LDHAP00338 332 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 HMGCRP04035 888 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ZDHHC11BP0C7U3 371 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 KRT10P13645 584 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ABCB4P21439 1286 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 PRKCHP24723 683 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MARK3P27448 753 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CHRNA3P32297 505 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 LSP1P33241 339 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ADRA1AP35348 466 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MC3RP41968 323 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SLC1A1P43005 524 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 PTPN9P43378 593 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 HK2P52789 917 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 NDST1P52848 882 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CORO7P57737 925 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 LILRA4P59901 499 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 IRF9Q00978 393 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SLC18A2Q05940 514 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CACNB2Q08289 660 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 FRG1Q14331 258 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 SLC29A2Q14542 456 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ZNF268Q14587 947 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 LPIN1Q14693 890 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 GRM3Q14832 879 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SGSM1Q2NKQ1 1148 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 C15orf59Q2T9L4 293 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 FYB2Q5VWT5 728 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CWF19L1Q69YN2 538 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 GADL1Q6ZQY3 521 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CLEC14AQ86T13 490 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 TMEM150AQ86TG1 271 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 FAM26EQ8N5C1 309 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 LRRC52Q8N7C0 313 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 OR10T2Q8NGX3 314 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 USP33Q8TEY7 942 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 TEKT4Q8WW24 435 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ZBTB9Q96C00 473 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 TMEM176AQ96HP8 235 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ZNF668Q96K58 619 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 FAM118BQ9BPY3 351 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MAK16Q9BXY0 300 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 FAM129AQ9BZQ8 928 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MYLK2Q9H1R3 596 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ABHD16BQ9H3Z7 469 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 AASDHPPTQ9NRN7 309 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CATSPERZQ9NTU4 200 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MARCH5Q9NX47 278 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 RNF186Q9NXI6 227 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MOCS1Q9NZB8 636 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 B4GALT6Q9UBX8 382 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MAGEL2Q9UJ55 1249 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ZNF180Q9UJW8 692 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 IPPQ9Y573 584 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 NR2E3Q9Y5X4 410 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 EXPH5Q8NEV8 1989 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CCL15-CCL14A0A0B4J2E2 113 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 KCNU1A8MYU2 1149 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 K7ERI5 159 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PRPF4O43172 522 aaKnown RBP eCLIP2.39□□□□□ -2.03
VPS54-202ENST00000354504 ZNF623O75123 536 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 RFPL1O75677 317 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SUN1O94901 812 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 IL18RAPO95256 599 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ITGB3P05106 788 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ASGR2P07307 311 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 FAM163BP0C2L3 166 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 COL6A1P12109 1028 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 GM2AP17900 193 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TBXAS1P24557 533 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 ITGB8P26012 769 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 MIPP30301 263 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ACTN2P35609 894 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms