RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 ZDHHC11BP0C7U3 371 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 MLNP12872 115 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 KRT4P19013 534 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 PRKCHP24723 683 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 HTR7P34969 479 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 GJA8P48165 433 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 RPL10AP62906 217 aaKnown RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 COG7P83436 770 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 NRG1Q02297 640 aaPredicted RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 SMAD1Q15797 465 aaKnown RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 XKR5Q6UX68 686 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 TFAP2DQ7Z6R9 452 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 LRRC34Q8IZ02 419 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 CNTD1Q8N815 330 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 RTL3Q8N8U3 475 aaKnown RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 GIMAP7Q8NHV1 300 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 GSDMBQ8TAX9 411 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 ARNTL2Q8WYA1 636 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 IGSF8Q969P0 613 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 STAMBPL1Q96FJ0 436 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 CHMP6Q96FZ7 201 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 TEKT5Q96M29 485 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 SMC6Q96SB8 1091 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 CCDC134Q9H6E4 229 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 NOL6Q9H6R4 1146 aaKnown RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 RC3H2Q9HBD1 1191 aaKnown RBP9.41□□□□□ -0.9
ATG4A-202ENST00000345734 UBP1Q9NZI7 540 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 DYRK1BQ9Y463 629 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 ANAPC1Q9H1A4 1944 aa9.41□□□□□ -0.9
ATG4A-202ENST00000345734 GOLGA6L7A0A1B0GV03 622 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 ABHD14A-ACY1A0A1B0GW23 586 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 ARHGAP42A6NI28 874 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 TRDMT1O14717 391 aaKnown RBP9.4□□□□□ -0.9
ATG4A-202ENST00000345734 PRPF4O43172 522 aaKnown RBP eCLIP9.4□□□□□ -0.9
ATG4A-202ENST00000345734 MTSS1O43312 755 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 TLR5O60602 858 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 AP2A1O95782 977 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 TIMP1P01033 207 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 SOD2P04179 222 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 INHBAP08476 426 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 SLC2A3P11169 496 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 CCNB1P14635 433 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 CES1P23141 567 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 RPA3P35244 121 aaPredicted RBP9.4□□□□□ -0.9
ATG4A-202ENST00000345734 RFC2P35250 354 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 PAPOLAP51003 745 aaKnown RBP9.4□□□□□ -0.9
ATG4A-202ENST00000345734 KCNQ1P51787 676 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 SF3A3Q12874 501 aaKnown RBP eCLIP9.4□□□□□ -0.9
ATG4A-202ENST00000345734 ALFQ53S48 1182 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 AFMIDQ63HM1 303 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 RAP1GAP2Q684P5 730 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 KCTD11Q693B1 232 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 CES3Q6UWW8 571 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 CIR1Q86X95 450 aaPredicted RBP9.4□□□□□ -0.9
ATG4A-202ENST00000345734 SLC39A11Q8N1S5 342 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 DENND1AQ8TEH3 1009 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 AUTS2Q8WXX7 1259 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 MYEOVQ96EZ4 313 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 OXNAD1Q96HP4 312 aaPredicted RBP9.4□□□□□ -0.9
ATG4A-202ENST00000345734 TSGA13Q96PP4 275 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 APOL2Q9BQE5 337 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 TTLL2Q9BWV7 592 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 OLA1Q9NTK5 396 aaKnown RBP9.4□□□□□ -0.9
ATG4A-202ENST00000345734 COMMD8Q9NX08 183 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 NKIRAS1Q9NYS0 192 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 SLC17A6Q9P2U8 582 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 TRHDEQ9UKU6 1024 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 IKBKGQ9Y6K9 419 aa9.4□□□□□ -0.9
ATG4A-202ENST00000345734 TYROBPO43914 113 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 SUN1O94901 812 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 IGLV3-27P01718 113 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 VIMP08670 466 aaKnown RBP9.4□□□□□ -0.91
ATG4A-202ENST00000345734 CSH1P0DML2 217 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 CSH2P0DML3 217 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 CCNCP24863 283 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 WDR5P61964 334 aaKnown RBP9.4□□□□□ -0.91
ATG4A-202ENST00000345734 BTG3Q14201 252 aaPredicted RBP9.4□□□□□ -0.91
ATG4A-202ENST00000345734 SLC1A5Q15758 541 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 PDCD2Q16342 344 aaPredicted RBP9.4□□□□□ -0.91
ATG4A-202ENST00000345734 STEAP4Q687X5 459 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 ITPRIPL1Q6GPH6 555 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 FBXL22Q6P050 247 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 FBXO46Q6PJ61 603 aaPredicted RBP9.4□□□□□ -0.91
ATG4A-202ENST00000345734 CPLX4Q7Z7G2 160 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 SLC26A11Q86WA9 606 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 LRRC6Q86X45 466 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 LZTR1Q8N653 840 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 ATP6V0D2Q8N8Y2 350 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 CKAP2Q8WWK9 683 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 ARMC5Q96C12 935 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 SERAC1Q96JX3 654 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 BTN2A3PQ96KV6 586 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 ZNF558Q96NG5 402 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 UBE2OQ9C0C9 1292 aaKnown RBP9.4□□□□□ -0.91
ATG4A-202ENST00000345734 C12orf65Q9H3J6 166 aaKnown RBP9.4□□□□□ -0.91
ATG4A-202ENST00000345734 SENP1Q9P0U3 644 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 AFF4Q9UHB7 1163 aaKnown RBP9.4□□□□□ -0.91
ATG4A-202ENST00000345734 HCN2Q9UL51 889 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 GRID1Q9ULK0 1009 aa9.4□□□□□ -0.91
ATG4A-202ENST00000345734 MYLKQ15746 1914 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms