RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SAMD15Q9P1V8 674 aa15.71■□□□□ 0.11
LIMS1-202ENST00000338045 ZMYM5Q9UJ78 669 aa15.71■□□□□ 0.11
LIMS1-202ENST00000338045 ZNF180Q9UJW8 692 aa15.71■□□□□ 0.11
LIMS1-202ENST00000338045 HELZP42694 1942 aaKnown RBP15.71■□□□□ 0.1
LIMS1-202ENST00000338045 CXorf49A8MYA2 514 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-202ENST00000338045 MDH1P40925 334 aaKnown RBP15.7■□□□□ 0.1
LIMS1-202ENST00000338045 WNT3AP56704 352 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 DSC2Q02487 901 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 IHHQ14623 411 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 FSCBQ5H9T9 825 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 SPANXN3Q5MJ09 141 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 CERCAMQ5T4B2 595 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 ELMSAN1Q6PJG2 1045 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.7■□□□□ 0.1
LIMS1-202ENST00000338045 TDRD5Q8NAT2 981 aaKnown RBP15.7■□□□□ 0.1
LIMS1-202ENST00000338045 SH3RF2Q8TEC5 729 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 MZB1Q8WU39 189 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 PSKH2Q96QS6 385 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 MGME1Q9BQP7 344 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 SPON2Q9BUD6 331 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 FICDQ9BVA6 458 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 POLR1EQ9GZS1 481 aaKnown RBP15.7■□□□□ 0.1
LIMS1-202ENST00000338045 ATP13A1Q9HD20 1204 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 SENP1Q9P0U3 644 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 UBA2Q9UBT2 640 aaPredicted RBP15.7■□□□□ 0.1
LIMS1-202ENST00000338045 OR51B4Q9Y5P0 310 aa15.7■□□□□ 0.1
LIMS1-202ENST00000338045 RANBP2P49792 3224 aaKnown RBP15.7■□□□□ 0.1
LIMS1-202ENST00000338045 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 CCDC195A0A1B0GUA6 201 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 FAM237BA0A1B0GVD1 139 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 FOXO6A8MYZ6 492 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 MUSKO15146 869 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 PMPCBO75439 489 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 USP1O94782 785 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 POLBP06746 335 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 CREB1P16220 341 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 GLDCP23378 1020 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 AVPR1AP37288 418 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 DUSP6Q16828 381 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 ARMC3Q5W041 872 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 RNF219Q5W0B1 726 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 LEKR1Q6ZMV7 388 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 SLC26A11Q86WA9 606 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 CARNMT1Q8N4J0 409 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 MRRFQ96E11 262 aaKnown RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 ALG14Q96F25 216 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 GDF15Q99988 308 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 FSD1LQ9BXM9 530 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 SMG9Q9H0W8 520 aaKnown RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 CERS4Q9HA82 394 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 SEPT3Q9UH03 358 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 SOX13Q9UN79 622 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 CCL26Q9Y258 94 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 RPS6KL1Q9Y6S9 549 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 H0Y626 953 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 INHBAP08476 426 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 CD86P42081 329 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 NTHL1P78549 312 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 ZNF235Q14590 738 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 SLC14A2Q15849 920 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 MPPE1Q53F39 396 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 GRASPQ7Z6J2 395 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 RBM23Q86U06 439 aaKnown RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 SRRM1Q8IYB3 904 aaKnown RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 BBS5Q8N3I7 341 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 PPM1NQ8N819 430 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 USP13Q92995 863 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 FCRL3Q96P31 734 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-202ENST00000338045 KIFC1Q9BW19 673 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 MUC3BQ9H195 1237 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 HAUS2Q9NVX0 235 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 ATG2AQ2TAZ0 1938 aa15.69■□□□□ 0.1
LIMS1-202ENST00000338045 ZCWPW2A0A1B0GU75 182 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ZNF197O14709 1029 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ATP9BO43861 1147 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ZMPSTE24O75844 475 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 TCF3P15923 654 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 TPH1P17752 444 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 KRT15P19012 456 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ARF5P84085 180 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 GUCY1A3Q02108 690 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ITKQ08881 620 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 NAB1Q13506 487 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 KCNC3Q14003 757 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 RAB30Q15771 203 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ANKRD20A4Q4UJ75 823 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ZNF697Q5TEC3 545 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 POTEHQ6S545 545 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 MARK2Q7KZI7 788 aaKnown RBP15.68■□□□□ 0.1
LIMS1-202ENST00000338045 CTAGE3PQ8IX95 158 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 RIN3Q8TB24 985 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 WFDC5Q8TCV5 224 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 SELENOSQ9BQE4 189 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 FEM1AQ9BSK4 669 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 NKX2-4Q9H2Z4 354 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 TLE6Q9H808 572 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 TDP1Q9NUW8 608 aa15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.68■□□□□ 0.1
LIMS1-202ENST00000338045 ACTL7AQ9Y615 435 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms