RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 OR14C36Q8NHC7 312 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 DNASE2BQ8WZ79 361 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 TSC1Q92574 1164 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 PPP1R16AQ96I34 528 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 LRIG1Q96JA1 1093 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 CALN1Q9BXU9 219 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 KDM4CQ9H3R0 1056 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 UBA2Q9UBT2 640 aaPredicted RBP14.26□□□□□ -0.13
LIMS1-201ENST00000332345 SUSD2Q9UGT4 822 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 ACTL7AQ9Y615 435 aa14.26□□□□□ -0.13
LIMS1-201ENST00000332345 NYNRINQ9P2P1 1898 aaKnown RBP14.26□□□□□ -0.13
LIMS1-201ENST00000332345 TNRC6BQ9UPQ9 1833 aaKnown RBP14.25□□□□□ -0.13
LIMS1-201ENST00000332345 CFAP54Q96N23 3096 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 FAM47DPA6NHR8 397 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 J3KR12 359 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 PRAMEF11O60813 436 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 LEFTY1O75610 366 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 TMCC1O94876 653 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 SDHBP21912 280 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 IL4RP24394 825 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 ARSEP51690 589 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 CCNHP51946 323 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-201ENST00000332345 GSDMDP57764 484 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 RHOAP61586 193 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 IL10RBQ08334 325 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 DPYSL3Q14195 570 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 DUOXA1Q1HG43 343 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 MYLK3Q32MK0 819 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 AASDHQ4L235 1098 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-201ENST00000332345 LRRC38Q5VT99 294 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 PEAR1Q5VY43 1037 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-201ENST00000332345 CPNE8Q86YQ8 564 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 LRRC49Q8IUZ0 686 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 ARHGAP12Q8IWW6 846 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 RHOT1Q8IXI2 618 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 OR2T34Q8NGX1 318 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 ZNF670Q9BS34 389 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 NUSAP1Q9BXS6 441 aaKnown RBP14.25□□□□□ -0.13
LIMS1-201ENST00000332345 TM6SF2Q9BZW4 377 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 C6orf106Q9H6K1 298 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-201ENST00000332345 SP110Q9HB58 689 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 TMEM74BQ9NUR3 256 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 SERGEFQ9UGK8 458 aa14.25□□□□□ -0.13
LIMS1-201ENST00000332345 EVLQ9UI08 416 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-201ENST00000332345 TPX2Q9ULW0 747 aaKnown RBP14.25□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3DA0A087WVF3 549 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3IA0A087WXS9 549 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3EA0A087X179 549 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3KA0A087X1G2 549 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3FA6NER0 549 aaPredicted RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3LB9A6J9 549 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 SPOPO43791 374 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 PALMO75781 387 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 FSBPO95073 299 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 IGSF6O95976 241 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 CTSLP07711 333 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 CD48P09326 243 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3HP0C7X1 549 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 COMTP21964 271 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 KDELR1P24390 212 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 MAOBP27338 520 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 DRD3P35462 400 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 CNTN1Q12860 1018 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 MMRN1Q13201 1228 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 RFTN1Q14699 578 aaPredicted RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 SF3A2Q15428 464 aaKnown RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 CYTH1Q15438 398 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 POM121L1PQ3SYA9 428 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 ANKRD20A8PQ5CZ79 823 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TRIM61Q5EBN2 209 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TMCO4Q5TGY1 634 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3GQ6DHY5 549 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3CQ6IPX1 549 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 SLC23A3Q6PIS1 610 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 NCEH1Q6PIU2 408 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 RAD9BQ6WBX8 426 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 TBC1D3Q8IZP1 549 aaPredicted RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 NPWQ8N729 165 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 GRIN3AQ8TCU5 1115 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 GDAP1L1Q96MZ0 367 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 OSBPL1AQ9BXW6 950 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 MAK16Q9BXY0 300 aaKnown RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 HDAC8Q9BY41 377 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 MIR1-1HGQ9H1L0 117 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 SMOC1Q9H4F8 434 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 ZDHHC6Q9H6R6 413 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 PDFQ9HBH1 243 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 ETNK2Q9NVF9 386 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 DDX56Q9NY93 547 aaKnown RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 IPO11Q9UI26 975 aaKnown RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 SLC6A14Q9UN76 642 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 ALG6Q9Y672 507 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.24□□□□□ -0.13
LIMS1-201ENST00000332345 WASF2Q9Y6W5 498 aa14.24□□□□□ -0.13
LIMS1-201ENST00000332345 A0A1B0GTW7 788 aa14.23□□□□□ -0.13
LIMS1-201ENST00000332345 KRIT1O00522 736 aa14.23□□□□□ -0.13
LIMS1-201ENST00000332345 BUB1BO60566 1050 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-201ENST00000332345 CFIP05156 583 aa14.23□□□□□ -0.13
LIMS1-201ENST00000332345 SERPINF2P08697 491 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms