RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CYP4Z2PQ8N1L4 340 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 RASGEF1CQ8N431 466 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 ITFG2Q969R8 447 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 SMAD5Q99717 465 aaKnown RBP11.65□□□□□ -0.54
VPS39-201ENST00000318006 POMKQ9H5K3 350 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 CRLS1Q9UJA2 301 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 NUDT5Q9UKK9 219 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 PLA2G4CQ9UP65 541 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 TNFSF13BQ9Y275 285 aa11.65□□□□□ -0.54
VPS39-201ENST00000318006 SPATA31C2B4DYI2 1134 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 FSCN2O14926 492 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 LYPLA2O95372 231 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 ASMTLO95671 621 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 GLP2RO95838 553 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 HOXC6P09630 235 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 CHI3L1P36222 383 aaPredicted RBP11.65□□□□□ -0.55
VPS39-201ENST00000318006 ANXA11P50995 505 aaKnown RBP11.65□□□□□ -0.55
VPS39-201ENST00000318006 CSE1LP55060 971 aaKnown RBP11.65□□□□□ -0.55
VPS39-201ENST00000318006 FBXW4P57775 412 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 KIAA0408Q6ZU52 694 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 MYO1HQ8N1T3 1032 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 SLC2A14Q8TDB8 520 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 RCN3Q96D15 328 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 TMEM109Q9BVC6 243 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 ZNF624Q9P2J8 865 aaPredicted RBP11.65□□□□□ -0.55
VPS39-201ENST00000318006 DOLKQ9UPQ8 538 aa11.65□□□□□ -0.55
VPS39-201ENST00000318006 WBP11Q9Y2W2 641 aaKnown RBP11.65□□□□□ -0.55
VPS39-201ENST00000318006 ALOX15BO15296 676 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 NAGLUP54802 743 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 MARSP56192 900 aaKnown RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 RTP1P59025 263 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 CNPY1Q3B7I2 92 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 FBXO39Q8N4B4 442 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 RBM15BQ8NDT2 890 aaKnown RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 MKL2Q9ULH7 1088 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 E5RJQ4 531 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 EGFRP00533 1210 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 POMCP01189 267 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 NELFEP18615 380 aaKnown RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 CCR3P51677 355 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 RPS7P62081 194 aaKnown RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 ZSWIM7Q19AV6 140 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 SCARA3Q6AZY7 606 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 PACS1Q6VY07 963 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 SUN5Q8TC36 379 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 EDEM1Q92611 657 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 COPS5Q92905 334 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 TLCD1Q96CP7 247 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 RTKNQ9BST9 563 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 PRKD2Q9BZL6 878 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 NMUR2Q9GZQ4 415 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 KRCC1Q9NPI7 259 aaPredicted RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 SLC12A8A0AV02 714 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 BTN3A3O00478 584 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 VAPBO95292 243 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 MYL12AP19105 171 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 MZF1P28698 734 aaPredicted RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 CCR1P32246 355 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 MARCKSL1P49006 195 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 CAPSQ13938 189 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 KHDC1Q4VXA5 237 aaKnown RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 LRRC38Q5VT99 294 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 ADCK2Q7Z695 626 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 EPHX4Q8IUS5 362 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 SPATA16Q9BXB7 569 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 GNEQ9Y223 722 aaKnown RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 RBMX2Q9Y388 322 aaKnown RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 TELO2Q9Y4R8 837 aa11.64□□□□□ -0.55
VPS39-201ENST00000318006 SETD1AO15047 1707 aaKnown RBP11.64□□□□□ -0.55
VPS39-201ENST00000318006 DHRS12A0PJE2 317 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 RNF225M0QZC1 329 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 CCNKO75909 580 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 RECQL4O94761 1208 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 GSTM1P09488 218 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 TSPAN19P0C672 248 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 LBPP18428 481 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 MAMLD1Q13495 774 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 SHROOM1Q2M3G4 852 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 ZACNQ401N2 412 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 IRF2BP2Q7Z5L9 587 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 PIGWQ7Z7B1 504 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 SLC44A2Q8IWA5 706 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 PDPRQ8NCN5 879 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 FAM136AQ96C01 138 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 KLHL32Q96NJ5 620 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 STARD7Q9NQZ5 370 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 RAPGEFL1Q9UHV5 662 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ITM2BQ9Y287 266 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ASTN2O75129 1339 aaPredicted RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 CNTNAP2Q9UHC6 1331 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 A0A1W2PPM1 405 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 DCDC2CA8MYV0 355 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 LRG1P02750 347 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 DNAJB2P25686 324 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 ELAVL2Q12926 359 aaKnown RBP11.63□□□□□ -0.55
VPS39-201ENST00000318006 POU6F1Q14863 301 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 NEK10Q6ZWH5 1172 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 SLCO6A1Q86UG4 719 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 DEFB106AQ8N104 65 aa11.63□□□□□ -0.55
VPS39-201ENST00000318006 AADATQ8N5Z0 425 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms