RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 ETV4P43268 484 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 KCNQ4P56696 695 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 RUNX1T1Q06455 604 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 PPP3CAQ08209 521 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 HERC3Q15034 1050 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ZACNQ401N2 412 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 HABP4Q5JVS0 413 aaKnown RBP6.75□□□□□ -1.33
ZNF540-201ENST00000316433 TCHHL1Q5QJ38 904 aaPredicted RBP6.75□□□□□ -1.33
ZNF540-201ENST00000316433 CIAPIN1Q6FI81 312 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 TTBK2Q6IQ55 1244 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ILDR2Q71H61 639 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 KRT77Q7Z794 578 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 SLC22A16Q86VW1 577 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ARMC8Q8IUR7 673 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ARHGEF19Q8IW93 802 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 CLYBLQ8N0X4 340 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 TMEM161BQ8NDZ6 487 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 SLC44A1Q8WWI5 657 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 SEPT1Q8WYJ6 367 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 MARC2Q969Z3 335 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 NT5C1BQ96P26 610 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 NAA50Q9GZZ1 169 aaKnown RBP6.75□□□□□ -1.33
ZNF540-201ENST00000316433 PARVAQ9NVD7 372 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ADPRHL2Q9NX46 363 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 SIRT5Q9NXA8 310 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 KCNK4Q9NYG8 393 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ACTR3BQ9P1U1 418 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ENPP5Q9UJA9 477 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 DNMT3LQ9UJW3 386 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 VPS28Q9UK41 221 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 PRR12Q9ULL5 1215 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 SLC27A5Q9Y2P5 690 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ZNF330Q9Y3S2 320 aaPredicted RBP6.75□□□□□ -1.33
ZNF540-201ENST00000316433 RIPK3Q9Y572 518 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 PCDHGA10Q9Y5H3 936 aa6.75□□□□□ -1.33
ZNF540-201ENST00000316433 ADGRA2Q96PE1 1338 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CNTNAP2Q9UHC6 1331 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 PRR5-ARHGAP8B1AHC4 643 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 FAM25AB3EWG3 89 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 FAM25CB3EWG5 89 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 FAM25GB3EWG6 89 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 TRDMT1O14717 391 aaKnown RBP6.74□□□□□ -1.33
ZNF540-201ENST00000316433 SEMA3DO95025 777 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ATG7O95352 703 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CALB1P05937 261 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ADRB2P07550 413 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ASNSP08243 561 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 KRT7P08729 469 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 GRIK1P39086 918 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 GRM5P41594 1212 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 MAGEA3P43357 314 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ABCG1P45844 678 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CRKP46108 304 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 GABRB2P47870 512 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 NUMBP49757 651 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CLCNKBP51801 687 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 NOMO3P69849 1222 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ARHGAP8P85298 464 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ILF2Q12905 390 aaKnown RBP6.74□□□□□ -1.33
ZNF540-201ENST00000316433 RAB39AQ14964 217 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ACAP2Q15057 778 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 UTS2BQ765I0 119 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 THNSL1Q8IYQ7 743 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CHAC2Q8WUX2 184 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 KCTD4Q8WVF5 259 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CCDC120Q96HB5 630 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 WACQ9BTA9 647 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CHID1Q9BWS9 393 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 BTBD2Q9BX70 525 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 GHITMQ9H3K2 345 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ERVMER34-1Q9H9K5 563 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 NTN4Q9HB63 628 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 TAS2R14Q9NYV8 317 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 FNIP2Q9P278 1114 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 DPP7Q9UHL4 492 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ZNF221Q9UK13 617 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 PTBP2Q9UKA9 531 aaKnown RBP6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CNOT11Q9UKZ1 510 aaKnown RBP6.74□□□□□ -1.33
ZNF540-201ENST00000316433 C3orf70A6NLC5 250 aaPredicted RBP6.74□□□□□ -1.33
ZNF540-201ENST00000316433 MUSKO15146 869 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 CCNKO75909 580 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ITGB3P05106 788 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 DNAJB2P25686 324 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ARNTP27540 789 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 RBL1P28749 1068 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ICAM3P32942 547 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 GRIA3P42263 894 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 PTPN5P54829 565 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 S100A12P80511 92 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 VAC14Q08AM6 782 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 PMS2P3Q13401 168 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 PRKD1Q15139 912 aaPredicted RBP6.74□□□□□ -1.33
ZNF540-201ENST00000316433 PON2Q15165 354 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 SURF1Q15526 300 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 LDLRAP1Q5SW96 308 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 ALKBH2Q6NS38 261 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 AADACL2Q6P093 401 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 DBX2Q6ZNG2 339 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 LRRTM3Q86VH5 581 aa6.74□□□□□ -1.33
ZNF540-201ENST00000316433 HPS6Q86YV9 775 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms