RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SLC9A3R1O14745 358 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZBTB22O15209 634 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GRID2O43424 1007 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ITGA2BP08514 1039 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FEN1P39748 380 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SSX2Q16385 188 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GRTP1Q5TC63 336 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 IFNEQ86WN2 208 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TRMT2AQ8IZ69 625 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 OR51D1Q8NGF3 324 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ROPN1LQ96C74 230 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GIMAP5Q96F15 307 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MMP27Q9H306 513 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 EPB41L1Q9H4G0 881 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 NANSQ9NR45 359 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 COX16Q9P0S2 106 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MAGED2Q9UNF1 606 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FIS1Q9Y3D6 152 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SDK2Q58EX2 2172 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 C2orf81A6NN90 581 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 DFFAO00273 331 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 NDUFS2O75306 463 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ANGPTL1O95841 491 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TCN1P20061 433 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GPD1P21695 349 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 NR4A2P43354 598 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CYCSP99999 105 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF844Q08AG5 666 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CCDC184Q52MB2 194 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PDPK2PQ6A1A2 396 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 WDR59Q6PJI9 974 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SLC4A11Q8NBS3 891 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PGAP3Q96FM1 320 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 RIT2Q99578 217 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 LRRC40Q9H9A6 602 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 NGRNQ9NPE2 291 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PRMT7Q9NVM4 692 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 LEMD3Q9Y2U8 911 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 REXO2Q9Y3B8 237 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CLIC4Q9Y696 253 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TLL2Q9Y6L7 1015 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SLC30A1Q9Y6M5 507 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 UTYO14607 1347 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CLTCL1P53675 1640 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 RHOBTB3O94955 611 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CSPG5O95196 566 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CERCAMQ5T4B2 595 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 DNAJC14Q6Y2X3 702 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TMC2Q8TDI7 906 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZBTB9Q96C00 473 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 KLHL5Q96PQ7 755 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TUBE1Q9UJT0 475 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 INPP5FQ9Y2H2 1132 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CCDC195A0A1B0GUA6 201 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 BTNL10A8MVZ5 291 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PDE8AO60658 829 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 OR7A10O76100 309 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PVALBP20472 110 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZAP70P43403 619 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CD151P48509 253 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 R3HCC1LQ7Z5L2 792 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 KDM1BQ8NB78 822 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TTC16Q8NEE8 873 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PHF10Q8WUB8 498 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 RNF38Q9H0F5 515 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ARMT1Q9H993 441 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MYNNQ9NPC7 610 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 INTS10Q9NVR2 710 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 A0A087X1B8 175 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 A0A088AWK7 358 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 HSBP1L1C9JCN9 74 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 RAD17O75943 681 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PRKACAP17612 351 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF10P21506 573 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 RORCP51449 518 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 RPS6P62753 249 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MPP1Q00013 466 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF234Q14588 700 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 LRRC14Q15048 493 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 COLEC12Q5KU26 742 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 THAP5Q7Z6K1 395 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ANKRD13BQ86YJ7 626 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GOLM1Q8NBJ4 401 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 AGAP11Q8TF27 550 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CLP1Q92989 425 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 C9orf72Q96LT7 481 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MRI1Q9BV20 369 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 IRF2BPLQ9H1B7 796 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF304Q9HCX3 659 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CLEC4AQ9UMR7 237 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PNMA6FA0A0J9YX94 578 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 E7ENX8 843 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CLDN3O15551 220 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GSTM5P46439 218 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MTHFSDQ2M296 383 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 NDUFAF5Q5TEU4 345 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 P2RY8Q86VZ1 359 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SUPT20HQ8NEM7 779 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GLG1Q92896 1179 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms