RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 C2orf71A6NGG8 1288 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 GOLGA8RI6L899 631 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 COCHO43405 550 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 CCNCP24863 283 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 TARSP26639 723 aaKnown RBP17.09■□□□□ 0.33
CPSF4-201ENST00000292476 NDST2P52849 883 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 E2F5Q15329 346 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 CTC1Q2NKJ3 1217 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 ANKRD20A2Q5SQ80 823 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 STXBP5Q5T5C0 1151 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 ANKRD20A1Q5TYW2 823 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 PIK3R6Q5UE93 754 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 ANKRD20A3Q5VUR7 823 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 TLDC1Q6P9B6 456 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 PRPF39Q86UA1 669 aaKnown RBP17.09■□□□□ 0.33
CPSF4-201ENST00000292476 CCNJLQ8IV13 435 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 PPM1NQ8N819 430 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 GIMAP7Q8NHV1 300 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 MICAL1Q8TDZ2 1067 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 MRPL38Q96DV4 380 aaKnown RBP17.09■□□□□ 0.33
CPSF4-201ENST00000292476 SIGLEC10Q96LC7 697 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 C7orf26Q96N11 449 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 PPP1R2P1Q96PQ5 205 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 FAM111AQ96PZ2 611 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 SRPK1Q96SB4 655 aaKnown RBP17.09■□□□□ 0.33
CPSF4-201ENST00000292476 NEU3Q9UQ49 428 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 C15orf41Q9Y2V0 281 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 PLLPQ9Y342 182 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 MFHAS1Q9Y4C4 1052 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 SNX10Q9Y5X0 201 aa17.09■□□□□ 0.33
CPSF4-201ENST00000292476 DRGXA6NNA5 263 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 F5H5T6 163 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 RNF103O00237 685 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 AVILO75366 819 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 LATS1O95835 1130 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 C8AP07357 584 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 DNAJB1P25685 340 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 CDC25CP30307 473 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 ERVFC1P60507 584 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 KRT72Q14CN4 511 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 TAF1BQ53T94 588 aaPredicted RBP17.08■□□□□ 0.32
CPSF4-201ENST00000292476 ATG16L1Q676U5 607 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 ITPRIPL1Q6GPH6 555 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 UNC5AQ6ZN44 842 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 ZNF534Q76KX8 674 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 CTAGE3PQ8IX95 158 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 CCDC110Q8TBZ0 833 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 MRPS31Q92665 395 aaKnown RBP17.08■□□□□ 0.32
CPSF4-201ENST00000292476 PTPRN2Q92932 1015 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 SKA1Q96BD8 255 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 PLAC1Q9HBJ0 212 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 PRDM6Q9NQX0 595 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 TMEM248Q9NWD8 314 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 LMCD1Q9NZU5 365 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 HAO1Q9UJM8 370 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 VANGL2Q9ULK5 521 aa17.08■□□□□ 0.32
CPSF4-201ENST00000292476 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.08■□□□□ 0.32
CPSF4-201ENST00000292476 BIRC5O15392 142 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ACSL4O60488 711 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 HAUS5O94927 633 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 F11P03951 625 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 HMBSP08397 361 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ARFIP2P53365 341 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 SKIV2LQ15477 1246 aaKnown RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 RABGAP1LQ5R372 815 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 PPM1LQ5SGD2 360 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ZNF449Q6P9G9 518 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 UMODL1-AS1Q8N2C9 162 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ATPAF2Q8N5M1 289 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 NPWQ8N729 165 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ACMSDQ8TDX5 336 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 THOC1Q96FV9 657 aaKnown RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 KLF6Q99612 283 aaPredicted RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 NAT9Q9BTE0 207 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 WDR91A4D1P6 747 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 RFPL1O75677 317 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ALDH1A2O94788 518 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ANP32DO95626 131 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 LMNAP02545 664 aaKnown RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 DLDP09622 509 aaKnown RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 VAV1P15498 845 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 TACR2P21452 398 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 MAPKAPK2P49137 400 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 CAMK1Q14012 370 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ANO4Q32M45 955 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 PLPP4Q5VZY2 271 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 RAP1GAP2Q684P5 730 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 PID1Q7Z2X4 250 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 MTDHQ86UE4 582 aaKnown RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 ZNF683Q8IZ20 524 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 RFWD2Q8NHY2 731 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 FATE1Q969F0 183 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 STAMBPL1Q96FJ0 436 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 RSRC1Q96IZ7 334 aaKnown RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 RPRD1AQ96P16 312 aaPredicted RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 MYCBPQ99417 103 aaPredicted RBP17.07■□□□□ 0.32
CPSF4-201ENST00000292476 TBC1D10AQ9BXI6 508 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 KCNK4Q9NYG8 393 aa17.07■□□□□ 0.32
CPSF4-201ENST00000292476 SEPT10Q9P0V9 454 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms