RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 GPR22Q99680 433 aa23.21■■□□□ 1.31
HOXD9-201ENST00000249499 CCSER2Q9H7U1 834 aa23.21■■□□□ 1.31
HOXD9-201ENST00000249499 ZFP69BQ9UJL9 534 aa23.21■■□□□ 1.31
HOXD9-201ENST00000249499 DCTN4Q9UJW0 460 aa23.21■■□□□ 1.31
HOXD9-201ENST00000249499 TACR2P21452 398 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 GRK2P25098 689 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 CSRP3P50461 194 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 RASSF2P50749 326 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 WNT3AP56704 352 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 SERINC3Q13530 473 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 CLEC14AQ86T13 490 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 INPP5DQ92835 1189 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 TADA1Q96BN2 335 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 ZNF599Q96NL3 588 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 PPP1R12CQ9BZL4 782 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 TREX1Q9NSU2 369 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 ANKRD6Q9Y2G4 727 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 SCN5AQ14524 2016 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 MICAL3Q7RTP6 2002 aa23.2■■□□□ 1.3
HOXD9-201ENST00000249499 A0A0G2JND7 137 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 F5H5T6 163 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 PMPCBO75439 489 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 OR1D2P34982 312 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 FAM91A1Q658Y4 838 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 MBLAC2Q68D91 279 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 GABPB2Q8TAK5 448 aaPredicted RBP23.19■■□□□ 1.3
HOXD9-201ENST00000249499 TMEM120AQ9BXJ8 343 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 MID2Q9UJV3 735 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 HEATR9A2RTY3 570 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 J3KR12 359 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 MGRN1O60291 552 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 HNRNPH1P31943 449 aaKnown RBP23.19■■□□□ 1.3
HOXD9-201ENST00000249499 ARCN1P48444 511 aaKnown RBP23.19■■□□□ 1.3
HOXD9-201ENST00000249499 ATN1P54259 1190 aaPredicted RBP23.19■■□□□ 1.3
HOXD9-201ENST00000249499 ELF3P78545 371 aaPredicted RBP23.19■■□□□ 1.3
HOXD9-201ENST00000249499 BTG3Q14201 252 aaPredicted RBP23.19■■□□□ 1.3
HOXD9-201ENST00000249499 POU6F1Q14863 301 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 NADSYN1Q6IA69 706 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 ZC3HC1Q86WB0 502 aaKnown RBP23.19■■□□□ 1.3
HOXD9-201ENST00000249499 SKA1Q96BD8 255 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 MYRFLQ96LU7 910 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 FAM167BQ9BTA0 163 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 LRMDAQ9H2I8 198 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 NT5MQ9NPB1 228 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 COPG2Q9UBF2 871 aa23.19■■□□□ 1.3
HOXD9-201ENST00000249499 A0A096LPK6 155 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 ADAM12O43184 909 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 ACSL4O60488 711 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 ABLIM3O94929 683 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 PAPSS2O95340 614 aaPredicted RBP23.18■■□□□ 1.3
HOXD9-201ENST00000249499 SOD2P04179 222 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 SERPINE1P05121 402 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 PRKCGP05129 697 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 APOA4P06727 396 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 HMBSP08397 361 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 SLC11A2P49281 568 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 TLE2Q04725 743 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 SLC10A7Q0GE19 358 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 PCLAFQ15004 111 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 KIAA1841Q6NSI8 718 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.18■■□□□ 1.3
HOXD9-201ENST00000249499 DEFB128Q7Z7B8 93 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 CLNKQ7Z7G1 428 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 PPP1R14CQ8TAE6 165 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 ZNF461Q8TAF7 563 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 PSMG2Q969U7 264 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 PLD4Q96BZ4 506 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 ZNF778Q96MU6 729 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 TMEM237Q96Q45 408 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 TBX21Q9UL17 535 aa23.18■■□□□ 1.3
HOXD9-201ENST00000249499 MAGED2Q9UNF1 606 aaPredicted RBP23.18■■□□□ 1.3
HOXD9-201ENST00000249499 TRAFD1O14545 582 aaPredicted RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 TOP3BO95985 862 aaKnown RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 FGF3P11487 239 aaPredicted RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 OR1E1P30953 314 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 HARS2P49590 506 aaKnown RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 RIPK1Q13546 671 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 PPM1JQ5JR12 505 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 HECTD3Q5T447 861 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 TMCO4Q5TGY1 634 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 KIAA0408Q6ZU52 694 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 MTDHQ86UE4 582 aaKnown RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 PABPC5Q96DU9 382 aaKnown RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 VN1R3Q9BXE9 311 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 CRISPLD2Q9H0B8 497 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 FAM96AQ9H5X1 160 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 STN1Q9H668 368 aaKnown RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 TMEM216Q9P0N5 145 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 ZNF840PA6NDX5 716 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 PRAMEF11O60813 436 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 MYL2P10916 166 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 COL6A2P12110 1019 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 PPP3CCP48454 512 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 SERPINH1P50454 418 aaKnown RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 ILF2Q12905 390 aaKnown RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 SLC14A2Q15849 920 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 TRIM60Q495X7 471 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 TAF1BQ53T94 588 aaPredicted RBP23.17■■□□□ 1.3
HOXD9-201ENST00000249499 C16orf46Q6P387 395 aa23.17■■□□□ 1.3
HOXD9-201ENST00000249499 CMC1Q7Z7K0 106 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms