RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 CDH19Q9H159 772 aa16.4■□□□□ 0.22
UBE3D-201ENST00000237186 ATP13A1Q9HD20 1204 aa16.4■□□□□ 0.22
UBE3D-201ENST00000237186 TMEM248Q9NWD8 314 aa16.4■□□□□ 0.22
UBE3D-201ENST00000237186 ABI2Q9NYB9 513 aaPredicted RBP16.4■□□□□ 0.22
UBE3D-201ENST00000237186 CLIC5Q9NZA1 410 aa16.4■□□□□ 0.22
UBE3D-201ENST00000237186 MPP6Q9NZW5 540 aa16.4■□□□□ 0.22
UBE3D-201ENST00000237186 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.4■□□□□ 0.22
UBE3D-201ENST00000237186 PTPRDP23468 1912 aa16.4■□□□□ 0.22
UBE3D-201ENST00000237186 NLRC5Q86WI3 1866 aa16.4■□□□□ 0.22
UBE3D-201ENST00000237186 IGLV3-10A0A075B6K4 115 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 E2F8A0AVK6 867 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 TARM1B6A8C7 271 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 RPSAP08865 295 aaKnown RBP16.39■□□□□ 0.22
UBE3D-201ENST00000237186 SBK3P0C264 359 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 PAMP19021 973 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 ABCG1P45844 678 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 NUMBP49757 651 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 HK2P52789 917 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 TBX4P57082 545 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 MRPL58Q14197 206 aaKnown RBP16.39■□□□□ 0.22
UBE3D-201ENST00000237186 RCN2Q14257 317 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 USP10Q14694 798 aaKnown RBP16.39■□□□□ 0.22
UBE3D-201ENST00000237186 POU6F1Q14863 301 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 GATA5Q9BWX5 397 aaPredicted RBP16.39■□□□□ 0.22
UBE3D-201ENST00000237186 ACE2Q9BYF1 805 aaPredicted RBP16.39■□□□□ 0.22
UBE3D-201ENST00000237186 UBE2OQ9C0C9 1292 aaKnown RBP16.39■□□□□ 0.22
UBE3D-201ENST00000237186 VPS45Q9NRW7 570 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 NUDT5Q9UKK9 219 aa16.39■□□□□ 0.22
UBE3D-201ENST00000237186 PATJQ8NI35 1801 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 VAPBO95292 243 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 HSPA4LO95757 839 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 F7P08709 466 aaPredicted RBP16.39■□□□□ 0.21
UBE3D-201ENST00000237186 SLC35E2BP0CK96 405 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 CRABP2P29373 138 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 OR1G1P47890 313 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 PTDSS1P48651 473 aaKnown RBP16.39■□□□□ 0.21
UBE3D-201ENST00000237186 RENBPP51606 427 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 DDR2Q16832 855 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 TRMT5Q32P41 509 aaKnown RBP16.39■□□□□ 0.21
UBE3D-201ENST00000237186 ACBD5Q5T8D3 534 aaPredicted RBP16.39■□□□□ 0.21
UBE3D-201ENST00000237186 KDELC1Q6UW63 502 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 KIAA0408Q6ZU52 694 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 RAPH1Q70E73 1250 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 SCUBE1Q8IWY4 988 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 SLC43A3Q8NBI5 491 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 C2CD4AQ8NCU7 369 aaPredicted RBP16.39■□□□□ 0.21
UBE3D-201ENST00000237186 STYXQ8WUJ0 223 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 TSNARE1Q96NA8 513 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 RANBP9Q96S59 729 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 DRC3Q9H069 523 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.39■□□□□ 0.21
UBE3D-201ENST00000237186 CREBZFQ9NS37 354 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 STX18Q9P2W9 335 aaKnown RBP16.39■□□□□ 0.21
UBE3D-201ENST00000237186 PCDHB5Q9Y5E4 795 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 DNAH12Q6ZR08 3092 aa16.39■□□□□ 0.21
UBE3D-201ENST00000237186 MOXD2PA6NHM9 499 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 PSMG1O95456 288 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 MOCS2O96007 188 aaPredicted RBP16.38■□□□□ 0.21
UBE3D-201ENST00000237186 PRDX6P30041 224 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 VARS2Q5ST30 1063 aaKnown RBP16.38■□□□□ 0.21
UBE3D-201ENST00000237186 LIPMQ5VYY2 423 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 CENPLQ8N0S6 344 aaPredicted RBP16.38■□□□□ 0.21
UBE3D-201ENST00000237186 ZNF781Q8N8C0 355 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 IMP4Q96G21 291 aaKnown RBP16.38■□□□□ 0.21
UBE3D-201ENST00000237186 GPR78Q96P69 363 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 FTHL17Q9BXU8 183 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 ZYG11BQ9C0D3 744 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 TASP1Q9H6P5 420 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 COG4Q9H9E3 785 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 ACOT9Q9Y305 439 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.38■□□□□ 0.21
UBE3D-201ENST00000237186 NUP205Q92621 2012 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 CENPFP49454 3210 aa16.38■□□□□ 0.21
UBE3D-201ENST00000237186 H0Y3Z8 333 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 PMPCBO75439 489 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 TADA2AO75478 443 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 TRPA1O75762 1119 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 PSEN1P49768 467 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 WNT3AP56704 352 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 RAB10P61026 200 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 USP46P62068 366 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 SLC34A1Q06495 639 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 CNGA3Q16281 694 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 MS4A13Q5J8X5 152 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 DENND6AQ8IWF6 608 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 ULK2Q8IYT8 1036 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 TEX26Q8N6G2 289 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 N4BP2L2Q92802 583 aaPredicted RBP16.37■□□□□ 0.21
UBE3D-201ENST00000237186 NAF1Q96HR8 494 aaKnown RBP16.37■□□□□ 0.21
UBE3D-201ENST00000237186 GLT1D1Q96MS3 346 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 FAM167BQ9BTA0 163 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 FSD1LQ9BXM9 530 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 ILKAPQ9H0C8 392 aaPredicted RBP16.37■□□□□ 0.21
UBE3D-201ENST00000237186 BATF3Q9NR55 127 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 SRRDQ9UH36 339 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 RAP2CQ9Y3L5 183 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 CASP8AP2Q9UKL3 1982 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 OR6C75A6NL08 312 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 DRGXA6NNA5 263 aa16.37■□□□□ 0.21
UBE3D-201ENST00000237186 PAPSS2O95340 614 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms