RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 METTL3Q86U44 580 aaKnown RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 KIAA0319LQ8IZA0 1049 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 PTGR2Q8N8N7 351 aaPredicted RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 ZSCAN18Q8TBC5 510 aaPredicted RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 VAV3Q9UKW4 847 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 QSOX1O00391 747 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 PDE2AO00408 941 aaPredicted RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 CCNB1P14635 433 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 NTSP30990 170 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 CLK2P49760 499 aaKnown RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 C16orf72Q14CZ0 275 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 CCDC149Q6ZUS6 474 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 PLPPR4Q7Z2D5 763 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 C8orf59Q8N0T1 100 aaPredicted RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 LNX1Q8TBB1 728 aaPredicted RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 POP5Q969H6 163 aaKnown RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 PPP3R2Q96LZ3 170 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 DCUN1D5Q9BTE7 237 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 TBCDQ9BTW9 1192 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 ZYG11BQ9C0D3 744 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 CDT1Q9H211 546 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 ASB8Q9H765 288 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 LEF1Q9UJU2 399 aaPredicted RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 NUDT5Q9UKK9 219 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 SNRPB2P08579 225 aaKnown RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 NFICP08651 508 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 HNRNPH3P31942 346 aaKnown RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 CHKAP35790 457 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 RHBDL3P58872 404 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 TRAF3Q13114 568 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 TOP3AQ13472 1001 aaPredicted RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 FNDC3BQ53EP0 1204 aaKnown RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 ZFPM1Q8IX07 1006 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 PCDH20Q8N6Y1 951 aaKnown RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 PTCD3Q96EY7 689 aaKnown RBP13.72□□□□□ -0.21
SF3A1-201ENST00000215793 ADI1Q9BV57 179 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 PRDM12Q9H4Q4 367 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 VPS45Q9NRW7 570 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 DNMT3LQ9UJW3 386 aa13.72□□□□□ -0.21
SF3A1-201ENST00000215793 DYTNA2CJ06 578 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 TSPAN19P0C672 248 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 NFKB1P19838 968 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 CD86P42081 329 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 FMO1Q01740 532 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 TTC27Q6P3X3 843 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 AFTPHQ6ULP2 937 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 CYP20A1Q6UW02 462 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 ULK2Q8IYT8 1036 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 BHLHE22Q8NFJ8 381 aaPredicted RBP13.71□□□□□ -0.21
SF3A1-201ENST00000215793 ART4Q93070 314 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 GINS4Q9BRT9 223 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 ACSS3Q9H6R3 686 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 PIK3C2BO00750 1634 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 RPL3P39023 403 aaKnown RBP13.71□□□□□ -0.21
SF3A1-201ENST00000215793 GSSP48637 474 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 TTMPQ5BVD1 217 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 C16orf59Q7L2K0 433 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 NET1Q7Z628 596 aaPredicted RBP13.71□□□□□ -0.21
SF3A1-201ENST00000215793 MSL3Q8N5Y2 521 aaKnown RBP13.71□□□□□ -0.21
SF3A1-201ENST00000215793 POMGNT2Q8NAT1 580 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 GLIS3Q8NEA6 775 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 MOSPD2Q8NHP6 518 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 RDH11Q8TC12 318 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 BAP1Q92560 729 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 MPP4Q96JB8 637 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 EBNA1BP2Q99848 306 aaKnown RBP13.71□□□□□ -0.21
SF3A1-201ENST00000215793 FANCEQ9HB96 536 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 GEMIN8Q9NWZ8 242 aaKnown RBP13.71□□□□□ -0.21
SF3A1-201ENST00000215793 BTBD7Q9P203 1132 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 PTCH2Q9Y6C5 1203 aa13.71□□□□□ -0.21
SF3A1-201ENST00000215793 HDAC3O15379 428 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 MSCO60682 206 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 NOMO3P69849 1222 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 HSPA14Q0VDF9 509 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 HEATR4Q86WZ0 1026 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 MRPL57Q9BQC6 102 aaKnown RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 GLIS2Q9BZE0 524 aaPredicted RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 CLEC4MQ9H2X3 399 aaPredicted RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 FAM198AQ9UFP1 575 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 RPS6KA6Q9UK32 745 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 MTF2Q9Y483 593 aaPredicted RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 FSCN2O14926 492 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 MARSP56192 900 aaKnown RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 ELF3P78545 371 aaPredicted RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 ITGB3BPQ13352 177 aaPredicted RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 INSCQ1MX18 579 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 IRAK1BP1Q5VVH5 260 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 ZNF655Q8N720 491 aaPredicted RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 ACO2Q99798 780 aaKnown RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 SENP6Q9GZR1 1112 aaPredicted RBP13.71□□□□□ -0.22
SF3A1-201ENST00000215793 HMG20AQ9NP66 347 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 POLR1DQ9Y2S0 133 aa13.71□□□□□ -0.22
SF3A1-201ENST00000215793 KIAA1210Q9ULL0 1709 aa13.7□□□□□ -0.22
SF3A1-201ENST00000215793 H7C0S8 307 aa13.7□□□□□ -0.22
SF3A1-201ENST00000215793 ULK1O75385 1050 aa13.7□□□□□ -0.22
SF3A1-201ENST00000215793 TFEBP19484 476 aa13.7□□□□□ -0.22
SF3A1-201ENST00000215793 IKBKEQ14164 716 aa13.7□□□□□ -0.22
SF3A1-201ENST00000215793 BMT2Q1RMZ1 405 aa13.7□□□□□ -0.22
SF3A1-201ENST00000215793 ZNF618Q5T7W0 954 aa13.7□□□□□ -0.22
SF3A1-201ENST00000215793 DUPD1Q68J44 220 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms