RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TUBB6Q9BUF5 446 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 VCXQ9H320 206 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 DCDC2Q9UHG0 476 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 E7ENX8 843 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 FBP2O00757 339 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 PMPCBO75439 489 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 GNAO1P09471 354 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 NPR3P17342 541 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 CKMT2P17540 419 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 RPL34P49207 117 aaKnown RBP10.85□□□□□ -0.67
USP28-201ENST00000003302 SERPINB9P50453 376 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 TNFAIP2Q03169 654 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 MED21Q13503 144 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 CCL14Q16627 93 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 MYLK3Q32MK0 819 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 PPP2R3CQ969Q6 453 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 OR12D3Q9UGF7 316 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 IPPQ9Y573 584 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 FDFT1P37268 417 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 CACNB2Q08289 660 aaPredicted RBP10.85□□□□□ -0.67
USP28-201ENST00000003302 RBM44Q6ZP01 1051 aaKnown RBP10.85□□□□□ -0.67
USP28-201ENST00000003302 PSTKQ8IV42 348 aaKnown RBP10.85□□□□□ -0.67
USP28-201ENST00000003302 PQLC1Q8N2U9 271 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 APPL2Q8NEU8 664 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 SLCO4A1Q96BD0 722 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 DUSP16Q9BY84 665 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 ZNF385DQ9H6B1 395 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 CASS4Q9NQ75 786 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 USP22Q9UPT9 525 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 PRORSD1PA6NEY8 169 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 DFFAO00273 331 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 MAGEB3O15480 346 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 TRIM13O60858 407 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 YBX3P16989 372 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP28-201ENST00000003302 SLC1A2P43004 574 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 CDH13P55290 713 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 USP10Q14694 798 aaKnown RBP10.85□□□□□ -0.67
USP28-201ENST00000003302 ZNF484Q5JVG2 852 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 STRADAQ7RTN6 431 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 LRRTM3Q86VH5 581 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 PRDM16Q9HAZ2 1276 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 CCDC167Q9P0B6 97 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 RNF11Q9Y3C5 154 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 LAMA1P25391 3075 aa10.85□□□□□ -0.67
USP28-201ENST00000003302 ZFC3H1O60293 1989 aaKnown RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 FAM149AA5PLN7 773 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 TRPA1O75762 1119 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SMIM10L2AP0DMW4 78 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SMIM10L2BP0DMW5 78 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 OGFRL1Q5TC84 451 aaPredicted RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 RWDD4Q6NW29 188 aaKnown RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 SCYL1Q96KG9 808 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SH3GL3Q99963 347 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SGIP1Q9BQI5 828 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SNX25Q9H3E2 840 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SOX17Q9H6I2 414 aaPredicted RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 GPAMQ9HCL2 828 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 ACOT8O14734 319 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 RTN3O95197 1032 aaPredicted RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 MT-ND1P03886 318 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 OR4Q2P0C623 313 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SNX17Q15036 470 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 PAFAH1B3Q15102 231 aaKnown RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 DGKDQ16760 1214 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 ARHGAP24Q8N264 748 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 HEXDCQ8WVB3 486 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 GAD1Q99259 594 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 MED10Q9BTT4 135 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 GNEQ9Y223 722 aaKnown RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 AP4B1Q9Y6B7 739 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 H3BSA7 217 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 CTSHP09668 335 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 PIRTP0C851 137 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 GARSP41250 739 aaKnown RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 TPI1P60174 286 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 POU5F1BQ06416 359 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 FLOT2Q14254 428 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 AAK1Q2M2I8 961 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SH2D4BQ5SQS7 431 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 OLFML2BQ68BL8 750 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 TAC4Q86UU9 113 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 ERO1BQ86YB8 467 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 GPR152Q8TDT2 470 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 CDKL2Q92772 493 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 CPNE1Q99829 537 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 RTP3Q9BQQ7 232 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 COLEC11Q9BWP8 271 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 IL1RL2Q9HB29 575 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 IGSF9Q9P2J2 1179 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 DARSP14868 501 aaKnown RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 ARCN1P48444 511 aaKnown RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 FOXA1P55317 472 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 SARNPP82979 210 aaKnown RBP10.84□□□□□ -0.67
USP28-201ENST00000003302 ECT2LQ008S8 904 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 GRM2Q14416 872 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 C14orf80Q86SX3 495 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 TICAM1Q8IUC6 712 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 MYO1HQ8N1T3 1032 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 DCBLD1Q8N8Z6 715 aa10.84□□□□□ -0.67
USP28-201ENST00000003302 LRTOMTQ8WZ04 291 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms