RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 OR2A12Q8NGT7 310 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 NELFBQ8WX92 580 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 ATXN7L3BQ96GX2 97 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 DHTKD1Q96HY7 919 aaPredicted RBP15.36■□□□□ 0.05
SYNE2-228ENST00000639659 PPP1R16AQ96I34 528 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 SLC2A13Q96QE2 648 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 CPXM1Q96SM3 734 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 C2orf49Q9BVC5 232 aaPredicted RBP15.36■□□□□ 0.05
SYNE2-228ENST00000639659 SYNCQ9H7C4 482 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 IL36AQ9UHA7 158 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.36■□□□□ 0.05
SYNE2-228ENST00000639659 LY6G6EA0A0G2JKS1 128 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 H3BM21 787 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 M0QYT0 321 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 SCAMP1O15126 338 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 PMM2O15305 246 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 SMAD6O43541 496 aaKnown RBP15.35■□□□□ 0.05
SYNE2-228ENST00000639659 HSF2BPO75031 334 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 TGM2P21980 687 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 CDH4P55283 916 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 ERVPABLB-1P60509 514 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 VAC14Q08AM6 782 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 DRAP1Q14919 205 aaPredicted RBP15.35■□□□□ 0.05
SYNE2-228ENST00000639659 ISXQ2M1V0 245 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 DEFB133Q30KQ1 61 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 ALFQ53S48 1182 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 EFHC1Q5JVL4 640 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 NEK5Q6P3R8 708 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 GUSBP11Q6P575 273 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 C22orf39Q6P5X5 142 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 C1orf131Q8NDD1 294 aaKnown RBP15.35■□□□□ 0.05
SYNE2-228ENST00000639659 ZNF548Q8NEK5 533 aaPredicted RBP15.35■□□□□ 0.05
SYNE2-228ENST00000639659 LMX1AQ8TE12 382 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 PPP1R13BQ96KQ4 1090 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 PSMB7Q99436 277 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 CRACR2AQ9BSW2 395 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 SPON2Q9BUD6 331 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 DUSP23Q9BVJ7 150 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 ASCL3Q9NQ33 180 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 HOOK1Q9UJC3 728 aaKnown RBP15.35■□□□□ 0.05
SYNE2-228ENST00000639659 MAN1B1Q9UKM7 699 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 HS3ST2Q9Y278 367 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 OR51B4Q9Y5P0 310 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 U3KQA8 63 aa15.35■□□□□ 0.05
SYNE2-228ENST00000639659 POM121BA6NF01 834 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 SLC28A2O43868 658 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 LEFTY1O75610 366 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 PAK4O96013 591 aaPredicted RBP15.34■□□□□ 0.05
SYNE2-228ENST00000639659 GP1BAP07359 652 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 SULT1E1P49888 294 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 VASPP50552 380 aaPredicted RBP15.34■□□□□ 0.05
SYNE2-228ENST00000639659 NEK3P51956 506 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 RNASE9P60153 205 aaKnown RBP15.34■□□□□ 0.05
SYNE2-228ENST00000639659 EIF4EBP2Q13542 120 aaPredicted RBP15.34■□□□□ 0.05
SYNE2-228ENST00000639659 PDE1CQ14123 709 aaPredicted RBP15.34■□□□□ 0.05
SYNE2-228ENST00000639659 ZSCAN23Q3MJ62 389 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 TTI2Q6NXR4 508 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 ZCCHC8Q6NZY4 707 aaKnown RBP15.34■□□□□ 0.05
SYNE2-228ENST00000639659 ABI3BPQ7Z7G0 1075 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 TMIEQ8NEW7 156 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 TKTL2Q9H0I9 626 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 MPP6Q9NZW5 540 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 CNTN6Q9UQ52 1028 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 TRPM6Q9BX84 2022 aa15.34■□□□□ 0.05
SYNE2-228ENST00000639659 A0A0D9SEW6 157 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 BICDL2A1A5D9 508 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 PMS2P1A4D2B8 440 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 BIN1O00499 593 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 MUSKO15146 869 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 RAD51BO15315 384 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 DAB1O75553 588 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 DXOO77932 396 aaKnown RBP15.33■□□□□ 0.04
SYNE2-228ENST00000639659 ERBB2P04626 1255 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 GLI1P08151 1106 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 FZD2Q14332 565 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 KYAT3Q6YP21 454 aaKnown RBP15.33■□□□□ 0.04
SYNE2-228ENST00000639659 DPY19L3Q6ZPD9 716 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 C11orf57Q6ZUT1 292 aaPredicted RBP15.33■□□□□ 0.04
SYNE2-228ENST00000639659 PRICKLE2Q7Z3G6 844 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 PARGQ86W56 976 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 TRIM59Q8IWR1 403 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 RYBPQ8N488 228 aaPredicted RBP15.33■□□□□ 0.04
SYNE2-228ENST00000639659 DCAF4L2Q8NA75 395 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 OR7D4Q8NG98 312 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 BMFQ96LC9 184 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 SLC17A9Q9BYT1 436 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 DPH1Q9BZG8 443 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 ZDHHC6Q9H6R6 413 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 USP29Q9HBJ7 922 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 PIGVQ9NUD9 493 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 ASNSD1Q9NWL6 643 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.33■□□□□ 0.04
SYNE2-228ENST00000639659 TBC1D30Q9Y2I9 924 aa15.33■□□□□ 0.04
SYNE2-228ENST00000639659 NEMP1O14524 444 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 AQP9O43315 295 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 C6P13671 934 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 ADRB3P13945 408 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 JUNDP17535 347 aa15.32■□□□□ 0.04
SYNE2-228ENST00000639659 RPS21P63220 83 aaKnown RBP15.32■□□□□ 0.04
SYNE2-228ENST00000639659 APBA1Q02410 837 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms