RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 GRM3Q14832 879 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 ST3GAL2Q16842 350 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 TMCO3Q6UWJ1 677 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 ZSCAN30Q86W11 494 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 OR2A12Q8NGT7 310 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 FATE1Q969F0 183 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 ZNF419Q96HQ0 510 aaPredicted RBP18.64■□□□□ 0.57
CLN3-259ENST00000637551 BTBD6Q96KE9 485 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 ZNF599Q96NL3 588 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 SPON2Q9BUD6 331 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 MAGEB5Q9BZ81 275 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 KLC2Q9H0B6 622 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 GPATCH2LQ9NWQ4 482 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 MBD1Q9UIS9 605 aaPredicted RBP18.64■□□□□ 0.57
CLN3-259ENST00000637551 PPM1HQ9ULR3 514 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 SOWAHDA6NJG2 315 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 MAP3K13O43283 966 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 PSTPIP1O43586 416 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 TCF4P15884 667 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 SDHBP21912 280 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 NUDT1P36639 197 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 VAV2P52735 878 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 SRSF5Q13243 272 aaKnown RBP18.63■□□□□ 0.57
CLN3-259ENST00000637551 IFI16Q16666 785 aaKnown RBP18.63■□□□□ 0.57
CLN3-259ENST00000637551 SMTNL2Q2TAL5 461 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 ACCSLQ4AC99 568 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 KCNT1Q5JUK3 1230 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 PLA2G2CQ5R387 149 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 ZNF366Q8N895 744 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 PPP1R16AQ96I34 528 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 BTBD1Q9H0C5 482 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 DDX56Q9NY93 547 aaKnown RBP18.63■□□□□ 0.57
CLN3-259ENST00000637551 CYP8B1Q9UNU6 501 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 USP24Q9UPU5 2620 aa18.63■□□□□ 0.57
CLN3-259ENST00000637551 BCLAF3A2AJT9 711 aaKnown RBP18.62■□□□□ 0.57
CLN3-259ENST00000637551 C10orf142B7Z368 130 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 PRAMEF11O60813 436 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 NDUFS2O75306 463 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 CD160O95971 181 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 MT-CO1P00395 513 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 ACVRL1P37023 503 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 CDH6P55285 790 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 SNRPD1P62314 119 aaKnown RBP18.62■□□□□ 0.57
CLN3-259ENST00000637551 RPL6Q02878 288 aaKnown RBP18.62■□□□□ 0.57
CLN3-259ENST00000637551 KRT81Q14533 505 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 MESDQ14696 234 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 CSRP2Q16527 193 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 SYCP2LQ5T4T6 812 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 Q6ZVU0 165 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 RHOT1Q8IXI2 618 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 STK40Q8N2I9 435 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 HSPH1Q92598 858 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 HMCESQ96FZ2 354 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 TOE1Q96GM8 510 aaKnown RBP18.62■□□□□ 0.57
CLN3-259ENST00000637551 OSBPL1AQ9BXW6 950 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 PDFQ9HBH1 243 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 VPS45Q9NRW7 570 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 SUSD2Q9UGT4 822 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 EVLQ9UI08 416 aaPredicted RBP18.62■□□□□ 0.57
CLN3-259ENST00000637551 MFHAS1Q9Y4C4 1052 aa18.62■□□□□ 0.57
CLN3-259ENST00000637551 ARHGAP6O43182 974 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 NRDCO43847 1150 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 ZNF821O75541 412 aaPredicted RBP18.61■□□□□ 0.57
CLN3-259ENST00000637551 ZNF806P0C7X5 589 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 BCKDHBP21953 392 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 IL4RP24394 825 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 SLC8A1P32418 973 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 HSPA9P38646 679 aaKnown RBP18.61■□□□□ 0.57
CLN3-259ENST00000637551 CSNK1DP48730 415 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 ZNF33AQ06730 810 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 IL10RBQ08334 325 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 DPYSL3Q14195 570 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 PAFAH1B3Q15102 231 aaKnown RBP18.61■□□□□ 0.57
CLN3-259ENST00000637551 CARD16Q5EG05 197 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 WDR45BQ5MNZ6 344 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 LYSMD4Q5XG99 296 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 TXNRD3NBQ6F5E7 133 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 RAD9BQ6WBX8 426 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 CYP2U1Q7Z449 544 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 SYT12Q8IV01 421 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 ARHGAP12Q8IWW6 846 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 KCTD6Q8NC69 237 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 OR2AP1Q8NGE2 309 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 CEP76Q8TAP6 659 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 RLN3Q8WXF3 142 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 DNASE2BQ8WZ79 361 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.61■□□□□ 0.57
CLN3-259ENST00000637551 NUMA1Q14980 2115 aa18.61■□□□□ 0.57
CLN3-259ENST00000637551 SMAD6O43541 496 aaKnown RBP18.6■□□□□ 0.57
CLN3-259ENST00000637551 GLDCP23378 1020 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 CHRNA3P32297 505 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 MAPK8P45983 427 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 TAS2R40P59535 323 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 RAD51Q06609 339 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 RALGPS1Q5JS13 557 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 DAB2IPQ5VWQ8 1189 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 NEK5Q6P3R8 708 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 MMAAQ8IVH4 418 aaKnown RBP18.6■□□□□ 0.57
CLN3-259ENST00000637551 HCAR2Q8TDS4 363 aa18.6■□□□□ 0.57
CLN3-259ENST00000637551 GDAP1L1Q96MZ0 367 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms