RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 TBC1D30Q9Y2I9 924 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 CCDC66A2RUB6 948 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 DRGXA6NNA5 263 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 PDE2AO00408 941 aaPredicted RBP12.95□□□□□ -0.34
PNKP-217ENST00000625216 CES2O00748 559 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 PSTPIP1O43586 416 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 SIN3BO75182 1162 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 ENDOD1O94919 500 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 PDGFRAP16234 1089 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 CTSOP43234 321 aaPredicted RBP12.95□□□□□ -0.34
PNKP-217ENST00000625216 PTPN9P43378 593 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 MAPK8P45983 427 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 SLC25A11Q02978 314 aaKnown RBP12.95□□□□□ -0.34
PNKP-217ENST00000625216 SLC14A1Q13336 389 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 TUBB2AQ13885 445 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 CDO1Q16878 200 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 WHAMMP3Q1A5X7 153 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 UAP1L1Q3KQV9 507 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 C9orf64Q5T6V5 341 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 TXNRD3NBQ6F5E7 133 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 CXorf57Q6NSI4 855 aaKnown RBP12.95□□□□□ -0.34
PNKP-217ENST00000625216 AADACL2Q6P093 401 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 FAM124AQ86V42 546 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 CREG2Q8IUH2 290 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 IGSF8Q969P0 613 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 ALG14Q96F25 216 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 MS4A14Q96JA4 679 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 HAPLN3Q96S86 360 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 PEBP4Q96S96 227 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 TBCBQ99426 244 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 FEM1AQ9BSK4 669 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 TUBB2BQ9BVA1 445 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 GTPBP2Q9BX10 602 aaKnown RBP12.95□□□□□ -0.34
PNKP-217ENST00000625216 SIK2Q9H0K1 926 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 SLC32A1Q9H598 525 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 SLCO3A1Q9UIG8 710 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 PCDHA3Q9Y5H8 950 aa12.95□□□□□ -0.34
PNKP-217ENST00000625216 TTC34A8MYJ7 566 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 OPHN1O60890 802 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 SEMA4FO95754 770 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 KCNA4P22459 653 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 MAOBP27338 520 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 IL1R2P27930 398 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 MZF1P28698 734 aaPredicted RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 SDC4P31431 198 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 ACSL1P33121 698 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 RDXP35241 583 aaKnown RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 NOVA1P51513 510 aaKnown RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 ATP11AP98196 1134 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 SEMA3BQ13214 749 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 ZNF211Q13398 564 aaPredicted RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 ELAVL3Q14576 367 aaKnown RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 CST6Q15828 149 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 N4BP2L1Q5TBK1 243 aaPredicted RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 PSAPL1Q6NUJ1 521 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 CYP4V2Q6ZWL3 525 aaPredicted RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 BNIPLQ7Z465 357 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 C14orf80Q86SX3 495 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 CIR1Q86X95 450 aaPredicted RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 CACUL1Q86Y37 369 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 RHOT1Q8IXI2 618 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 RASGEF1CQ8N431 466 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 MINDY1Q8N5J2 469 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 UBL4BQ8N7F7 174 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 FAM172AQ8WUF8 416 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 PBKQ96KB5 322 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 RPL10LQ96L21 214 aaKnown RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 FAM129BQ96TA1 746 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 MIR1-1HGQ9H1L0 117 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 CARD9Q9H257 536 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 PABPC3Q9H361 631 aaKnown RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 KLHL11Q9NVR0 708 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 DNAAF2Q9NVR5 837 aaKnown RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 FBXL12Q9NXK8 326 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 SLC25A13Q9UJS0 675 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 TPX2Q9ULW0 747 aaKnown RBP12.94□□□□□ -0.34
PNKP-217ENST00000625216 OR51B4Q9Y5P0 310 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 NUP205Q92621 2012 aa12.94□□□□□ -0.34
PNKP-217ENST00000625216 BCAT2O15382 392 aaPredicted RBP12.93□□□□□ -0.34
PNKP-217ENST00000625216 ATP9BO43861 1147 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 CEP104O60308 925 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 ADH1BP00325 375 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 C5AR1P21730 350 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 MIPP30301 263 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 SLC8A1P32418 973 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 PCK1P35558 622 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 SSR1P43307 286 aaKnown RBP12.93□□□□□ -0.34
PNKP-217ENST00000625216 HDAC4P56524 1084 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 RWDD2BP57060 319 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 HNRNPDQ14103 355 aaKnown RBP12.93□□□□□ -0.34
PNKP-217ENST00000625216 ACAP1Q15027 740 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 ATP13A4Q4VNC1 1196 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 IL27RAQ6UWB1 636 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 DSG4Q86SJ6 1040 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 PIP4P1Q86T03 277 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 SETD3Q86TU7 594 aaPredicted RBP12.93□□□□□ -0.34
PNKP-217ENST00000625216 ZNF683Q8IZ20 524 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 C1orf216Q8TAB5 229 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 GANCQ8TET4 914 aa12.93□□□□□ -0.34
PNKP-217ENST00000625216 UBE2Q2Q8WVN8 375 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms