RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 ACDQ96AP0 544 aa18.15■□□□□ 0.5
PTCHD3-202ENST00000622555 ZNF419Q96HQ0 510 aaPredicted RBP18.15■□□□□ 0.5
PTCHD3-202ENST00000622555 RAB6BQ9NRW1 208 aa18.15■□□□□ 0.5
PTCHD3-202ENST00000622555 RSPH14Q9UHP6 348 aa18.15■□□□□ 0.5
PTCHD3-202ENST00000622555 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 ARNTLO00327 626 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 SEC31AO94979 1220 aaKnown RBP18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 METTL18O95568 372 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 HLA-DQB2P05538 268 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 CISD3P0C7P0 127 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 IL9P15248 144 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 GJA4P35212 333 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 SLC6A11P48066 632 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 VSNL1P62760 191 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 CALCOCO2Q13137 446 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 CUL1Q13616 776 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 ZNF235Q14590 738 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 GRAMD4Q6IC98 578 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 RETSATQ6NUM9 610 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 AHI1Q8N157 1196 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 TEX26Q8N6G2 289 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 CNTD1Q8N815 330 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 CSGALNACT1Q8TDX6 532 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 NXPE3Q969Y0 559 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 NT5MQ9NPB1 228 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 GRHL1Q9NZI5 618 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 WHRNQ9P202 907 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 IGSF9Q9P2J2 1179 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 DEC1Q9P2X7 70 aa18.14■□□□□ 0.49
PTCHD3-202ENST00000622555 DNALI1O14645 258 aaPredicted RBP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 ITIH2P19823 946 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 NFKB1P19838 968 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 MCM3P25205 808 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 PSMB4P28070 264 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 CD68P34810 354 aaPredicted RBP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 CARSP49589 748 aaKnown RBP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 GEMIN4P57678 1058 aaKnown RBP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 KDSRQ06136 332 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 HLTFQ14527 1009 aaKnown RBP eCLIP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 RFTN1Q14699 578 aaPredicted RBP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 KIAA0907Q7Z7F0 614 aaPredicted RBP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 BBS5Q8N3I7 341 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 BBOF1Q8ND07 529 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 CINPQ9BW66 212 aaPredicted RBP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 GBA3Q9H227 469 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 ETNK1Q9HBU6 452 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 SEPT3Q9UH03 358 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 TPX2Q9ULW0 747 aaKnown RBP18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 SLC27A6Q9Y2P4 619 aa18.13■□□□□ 0.49
PTCHD3-202ENST00000622555 ASGR2P07307 311 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 POLR2EP19388 210 aaKnown RBP18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 FDFT1P37268 417 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 ITGA8P53708 1063 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 ITKQ08881 620 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 GEN1Q17RS7 908 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 PARP6Q2NL67 630 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 MBLAC2Q68D91 279 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 ADIPOR2Q86V24 386 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 SLC44A3Q8N4M1 653 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 WFIKKN2Q8TEU8 576 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 GLOD4Q9HC38 313 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 ARFGAP3Q9NP61 516 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 ANAPC5Q9UJX4 755 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 TMCC1O94876 653 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 CD160O95971 181 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 MT-CO1P00395 513 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 TNFRSF8P28908 595 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 OPRD1P41143 372 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 CTSOP43234 321 aaPredicted RBP18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 PLTPP55058 493 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 SULT2A1Q06520 285 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 SYCP2LQ5T4T6 812 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 PCGF5Q86SE9 256 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 PPIL6Q8IXY8 311 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 CPT1BQ92523 772 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 HAUS2Q9NVX0 235 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 SLC25A13Q9UJS0 675 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 NFU1Q9UMS0 254 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 ATP8A1Q9Y2Q0 1164 aa18.12■□□□□ 0.49
PTCHD3-202ENST00000622555 PRUNE2Q8WUY3 3088 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 E7EVH7 732 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 NDC80O14777 642 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 SOX9P48436 509 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 SERPINH1P50454 418 aaKnown RBP18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 MAXP61244 160 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 CYTH1Q15438 398 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 INO80DQ53TQ3 878 aaPredicted RBP18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 BEND6Q5SZJ8 279 aaPredicted RBP18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 RNASEH2BQ5TBB1 312 aaKnown RBP18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 TMEM215Q68D42 235 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 NAIF1Q69YI7 327 aaPredicted RBP18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 GSPT2Q8IYD1 628 aaKnown RBP18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 PGBD5Q8N414 524 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 RPL10LQ96L21 214 aaKnown RBP18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 CIPCQ9C0C6 399 aa18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 FCF1Q9Y324 198 aaKnown RBP18.11■□□□□ 0.49
PTCHD3-202ENST00000622555 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.1■□□□□ 0.49
PTCHD3-202ENST00000622555 K7ERQ8 282 aa18.1■□□□□ 0.49
PTCHD3-202ENST00000622555 APRTP07741 180 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms