RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SH3TC2Q8TF17 1288 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 FBXO32Q969P5 355 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 HMCESQ96FZ2 354 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 VPS39Q96JC1 886 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 VAT1Q99536 393 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 CADM1Q9BY67 442 aaKnown RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 THAP1Q9NVV9 213 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 MKS1Q9NXB0 559 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 COPG2Q9UBF2 871 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 NKX1-2Q9UD57 310 aaPredicted RBP10.8□□□□□ -0.68
CUX1-221ENST00000622516 ADAM28Q9UKQ2 775 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 ACTL7AQ9Y615 435 aa10.8□□□□□ -0.68
CUX1-221ENST00000622516 NYNRINQ9P2P1 1898 aaKnown RBP10.79□□□□□ -0.68
CUX1-221ENST00000622516 AURKAO14965 403 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 MATN3O15232 486 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 RPSAP08865 295 aaKnown RBP10.79□□□□□ -0.68
CUX1-221ENST00000622516 ESRRAP11474 423 aaPredicted RBP10.79□□□□□ -0.68
CUX1-221ENST00000622516 MAP2K2P36507 400 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 LIMK2P53671 638 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 IHHQ14623 411 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 MS4A13Q5J8X5 152 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 DENND5AQ6IQ26 1287 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 CFAP52Q8N1V2 620 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 PSMG2Q969U7 264 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 NSL1Q96IY1 281 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 SERPINB11Q96P15 392 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 CCSER2Q9H7U1 834 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 CREBZFQ9NS37 354 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 SOX13Q9UN79 622 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 PCDHB7Q9Y5E2 793 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 PCDHB5Q9Y5E4 795 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 THSD7BQ9C0I4 1608 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 TK2O00142 265 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 SCAMP3O14828 347 aaKnown RBP10.79□□□□□ -0.68
CUX1-221ENST00000622516 GYG2O15488 501 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 CAPN15O75808 1086 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 ATP5HO75947 161 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 CABYRO75952 493 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 RALBP11234 206 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 PTPN4P29074 926 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 NPY2RP49146 381 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 ATN1P54259 1190 aaPredicted RBP10.79□□□□□ -0.68
CUX1-221ENST00000622516 HTRA3P83110 453 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 COG7P83436 770 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 SLC41A1Q8IVJ1 513 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 TRIM42Q8IWZ5 723 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 RTL3Q8N8U3 475 aaKnown RBP10.79□□□□□ -0.68
CUX1-221ENST00000622516 PTCD3Q96EY7 689 aaKnown RBP10.79□□□□□ -0.68
CUX1-221ENST00000622516 MAN1C1Q9NR34 630 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 SCML2Q9UQR0 700 aa10.79□□□□□ -0.68
CUX1-221ENST00000622516 AAR2Q9Y312 384 aaKnown RBP10.79□□□□□ -0.68
CUX1-221ENST00000622516 SLC12A8A0AV02 714 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 ERI2A8K979 691 aaKnown RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 PRR5-ARHGAP8B1AHC4 643 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 BIRC5O15392 142 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 PQBP1O60828 265 aaKnown RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 ALDH2P05091 517 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 CPA3P15088 417 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 SLC11A1P49279 550 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 KCNQ1P51787 676 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 CCL23P55773 120 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 FAM189BP81408 668 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 ARHGAP8P85298 464 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 NFE2Q16621 373 aaPredicted RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 DEFB115Q30KQ5 88 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 FBXL22Q6P050 247 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 LDB1Q86U70 411 aaPredicted RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 ACMSDQ8TDX5 336 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 APBB2Q92870 758 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 MRGPRX2Q96LB1 330 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 RAB3IPQ96QF0 476 aaPredicted RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 IL12RB2Q99665 862 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 DENND2DQ9H6A0 471 aaPredicted RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 KCNK4Q9NYG8 393 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 TAS2R1Q9NYW7 299 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 FGF10O15520 208 aaPredicted RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 ADAM12O43184 909 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 BUD23O43709 281 aaKnown RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 VNN2O95498 520 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 YWHAQP27348 245 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 ARNTP27540 789 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 CYP2C18P33260 490 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 CD86P42081 329 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 SERPINB8P50452 374 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 RASSF2P50749 326 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 DSC2Q02487 901 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 USP10Q14694 798 aaKnown RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 PKN3Q6P5Z2 889 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 MAVSQ7Z434 540 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 MFSD6LQ8IWD5 586 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 SCML4Q8N228 414 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 TTC16Q8NEE8 873 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 PIWIL2Q8TC59 973 aaKnown RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 TSGA13Q96PP4 275 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 FCRL5Q96RD9 977 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 SORT1Q99523 831 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 TASP1Q9H6P5 420 aa10.78□□□□□ -0.68
CUX1-221ENST00000622516 HMX1Q9NP08 348 aaPredicted RBP10.78□□□□□ -0.68
CUX1-221ENST00000622516 MARCH2Q9P0N8 246 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms