RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 MAFKO60675 156 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 ALPIP09923 528 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 BGNP21810 368 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 IGFBP4P22692 258 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 NRIP1P48552 1158 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 IRF9Q00978 393 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 NIPAL4Q0D2K0 466 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 ELAVL2Q12926 359 aaKnown RBP10.71□□□□□ -0.69
VPS11-208ENST00000621676 DCBLD1Q8N8Z6 715 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 MRPS31Q92665 395 aaKnown RBP10.71□□□□□ -0.69
VPS11-208ENST00000621676 APBB2Q92870 758 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 ESAMQ96AP7 390 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 SCYL1Q96KG9 808 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 SIGLEC10Q96LC7 697 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 CYTH2Q99418 400 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 SMOC2Q9H3U7 446 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 MTRRQ9UBK8 725 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 SLCO3A1Q9UIG8 710 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 GRID1Q9ULK0 1009 aa10.71□□□□□ -0.69
VPS11-208ENST00000621676 COL4A6Q14031 1691 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 THSD7BQ9C0I4 1608 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 ABHD14A-ACY1A0A1B0GW23 586 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 BCLAF3A2AJT9 711 aaKnown RBP10.71□□□□□ -0.7
VPS11-208ENST00000621676 EIF3HO15372 352 aaKnown RBP eCLIP10.71□□□□□ -0.7
VPS11-208ENST00000621676 WDR4P57081 412 aaKnown RBP10.71□□□□□ -0.7
VPS11-208ENST00000621676 GABPB1Q06547 395 aaPredicted RBP10.71□□□□□ -0.7
VPS11-208ENST00000621676 SLC5A9Q2M3M2 681 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 PPM1LQ5SGD2 360 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 KDM7AQ6ZMT4 941 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 CAMK1DQ8IU85 385 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 MREGQ8N565 214 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 IFT43Q96FT9 208 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 TLE6Q9H808 572 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 NPHS2Q9NP85 383 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 MAN1C1Q9NR34 630 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 UTP6Q9NYH9 597 aaKnown RBP10.71□□□□□ -0.7
VPS11-208ENST00000621676 PCDHB9Q9Y5E1 797 aa10.71□□□□□ -0.7
VPS11-208ENST00000621676 NCF1BA6NI72 391 aaPredicted RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 NCF1CA8MVU1 366 aaPredicted RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 LYPLA1O75608 230 aaPredicted RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 IVLP07476 585 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 COL6A1P12109 1028 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 NCF1P14598 390 aaPredicted RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 FOXN2P32314 431 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 SLC11A2P49281 568 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 CDKN1CP49918 316 aaPredicted RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 MESP2Q0VG99 397 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 ZNF449Q6P9G9 518 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 TAOK1Q7L7X3 1001 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 TMEM25Q86YD3 366 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 HERC6Q8IVU3 1022 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 MFN1Q8IWA4 741 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 SFTPA1Q8IWL2 248 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 SH3RF2Q8TEC5 729 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 BTN2A3PQ96KV6 586 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 SLC46A2Q9BY10 475 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 EVLQ9UI08 416 aaPredicted RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 RUVBL2Q9Y230 463 aaKnown RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 FAM50BQ9Y247 325 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 GMNCA6NCL1 334 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 PLK4O00444 970 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 GLUD1P00367 558 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 MX2P20592 715 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 MMP13P45452 471 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 SARNPP82979 210 aaKnown RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 SKIV2LQ15477 1246 aaKnown RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 SPRED3Q2MJR0 410 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 COL13A1Q5TAT6 717 aaPredicted RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 ZNF470Q6ECI4 717 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 PSTKQ8IV42 348 aaKnown RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 PTPRN2Q92932 1015 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 TBATAQ96M53 351 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 NOD2Q9HC29 1040 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 AFF4Q9UHB7 1163 aaKnown RBP10.7□□□□□ -0.7
VPS11-208ENST00000621676 TLR6Q9Y2C9 796 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 TEX264Q9Y6I9 313 aa10.7□□□□□ -0.7
VPS11-208ENST00000621676 EBAG9O00559 213 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 INSIG1O15503 277 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 ACSL4O60488 711 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 PIGNO95427 931 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 EIF3BP55884 814 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 CRYMQ14894 314 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 SYDE1Q6ZW31 735 aaPredicted RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 KIF2BQ8N4N8 673 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 SNX31Q8N9S9 440 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 RIN3Q8TB24 985 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 ITFG1Q8TB96 612 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 CCHCR1Q8TD31 782 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 ZNF473Q8WTR7 871 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 TEKT5Q96M29 485 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 EBNA1BP2Q99848 306 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 PLAC1Q9HBJ0 212 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 ABCB8Q9NUT2 735 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 PSMC3IPQ9P2W1 217 aaPredicted RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 CD84Q9UIB8 345 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 NEMP2A6NFY4 417 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 IQCF5A8MTL0 148 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 COPEO14579 308 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 TPP1O14773 563 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 PRAMEF12O95522 483 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms