RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 SERPINA6P08185 405 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 HNRNPLP14866 589 aaKnown RBP eCLIP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 ATP1A4Q13733 1029 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 SKIV2LQ15477 1246 aaKnown RBP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 TMEM26Q6ZUK4 368 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 CAMK1DQ8IU85 385 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 C10orf107Q8IVU9 208 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 TERB1Q8NA31 727 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 MCOLN3Q8TDD5 553 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 RORBQ92753 470 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 MIEF2Q96C03 454 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 FAM192AQ9GZU8 254 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 C12orf65Q9H3J6 166 aaKnown RBP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 CATSPERZQ9NTU4 200 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 CLIC5Q9NZA1 410 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 OPTCQ9UBM4 332 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 RAP2CQ9Y3L5 183 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 SNRPB2P08579 225 aaKnown RBP14.19□□□□□ -0.14
CPSF1-212ENST00000616140 ANPEPP15144 967 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 S100A3P33764 101 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 GBE1Q04446 702 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 CCDC15Q0P6D6 951 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 NOMO1Q15155 1222 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 RAP1GAP2Q684P5 730 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 FAM45BPQ6NSW5 357 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 TRAF7Q6Q0C0 670 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 ABHD15Q6UXT9 468 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 FAM13CQ8NE31 585 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 NKX2-3Q8TAU0 364 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 DNAJB14Q8TBM8 379 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 RCN3Q96D15 328 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 MAML3Q96JK9 1138 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 UGT2B28Q9BY64 529 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 MORF4L1Q9UBU8 362 aa14.19□□□□□ -0.14
CPSF1-212ENST00000616140 GSNP06396 782 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 MSH3P20585 1137 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 SOX6P35712 828 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 ALDH9A1P49189 494 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 MAXP61244 160 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 FITM2Q8N6M3 262 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 MAGEE2Q8TD90 523 aaPredicted RBP14.18□□□□□ -0.14
CPSF1-212ENST00000616140 SYBUQ9NX95 663 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 KLQ9UEF7 1012 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 ANXA11P50995 505 aaKnown RBP14.18□□□□□ -0.14
CPSF1-212ENST00000616140 PRAMEF19Q5SWL8 479 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 ZNF621Q6ZSS3 439 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 ECHDC2Q86YB7 292 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 GSTCDQ8NEC7 633 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 OR52K2Q8NGK3 314 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 UCMAQ8WVF2 138 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 NKD2Q969F2 451 aaPredicted RBP14.18□□□□□ -0.14
CPSF1-212ENST00000616140 CDK5RAP1Q96SZ6 601 aaKnown RBP14.18□□□□□ -0.14
CPSF1-212ENST00000616140 YME1L1Q96TA2 773 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 SEMA3CQ99985 751 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 ARL8BQ9NVJ2 186 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 RIMS1Q86UR5 1692 aaKnown RBP14.18□□□□□ -0.14
CPSF1-212ENST00000616140 SNTNA6NMZ2 147 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 BIRC5O15392 142 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 ERBB2P04626 1255 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 GABRB2P47870 512 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 TAF5Q15542 800 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 FBXO30Q8TB52 745 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 PNPOQ9NVS9 261 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 ARL15Q9NXU5 204 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 ANAPC2Q9UJX6 822 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 EFR3BQ9Y2G0 817 aa14.18□□□□□ -0.14
CPSF1-212ENST00000616140 RTN3O95197 1032 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-212ENST00000616140 C2P06681 752 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ATP6V1C1P21283 382 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CDH13P55290 713 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 JAM2P57087 298 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 RAB10P61026 200 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 BCL2L1Q07817 233 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 NCF4Q15080 339 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 TRMT11Q7Z4G4 463 aaKnown RBP14.17□□□□□ -0.14
CPSF1-212ENST00000616140 FAM228AQ86W67 206 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 SLC44A1Q8WWI5 657 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 TPD52L3Q96J77 140 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 OSBPL7Q9BZF2 842 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ZNF112Q9UJU3 913 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 INVSQ9Y283 1065 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CASZ1Q86V15 1759 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ADAMTS3O15072 1205 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 VPS4BO75351 444 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CYP2A7P20853 494 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 MSX2P35548 267 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ARL4DP49703 201 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CLCN5P51795 746 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ACSM2AQ08AH3 577 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ILF2Q12905 390 aaKnown RBP14.17□□□□□ -0.14
CPSF1-212ENST00000616140 MAPK11Q15759 364 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 PTPRNQ16849 979 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ARMC12Q5T9G4 340 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ACSM2BQ68CK6 577 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 SCIMPQ6UWF3 145 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 C16orf59Q7L2K0 433 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 PHACTR4Q8IZ21 702 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 LRRC52Q8N7C0 313 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CPT1BQ92523 772 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 TMEM106CQ9BVX2 250 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms