RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RGS20O76081 388 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 MFN2O95140 757 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 ADRB2P07550 413 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 ATF6P18850 670 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 GRIA3P42263 894 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 CLK1P49759 484 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 VAMP7P51809 220 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 TMBIM6P55061 237 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 JAM2P57087 298 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 MRPS15P82914 257 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 NRF1Q16656 503 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 CCNJQ5T5M9 372 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 TRIM72Q6ZMU5 477 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 METTL3Q86U44 580 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 OR5H6Q8NGV6 325 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 S100ZQ8WXG8 99 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 SLC7A3Q8WY07 619 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 DEPDC7Q96QD5 511 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 STN1Q9H668 368 aaKnown RBP10.39□□□□□ -0.75
VPS39-214ENST00000614932 SLA2Q9H6Q3 261 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 ATP6V1HQ9UI12 483 aa10.39□□□□□ -0.75
VPS39-214ENST00000614932 SDR42E2A6NKP2 422 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 FAM189A1O60320 539 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 GARTP22102 1010 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 SSTR3P32745 418 aaPredicted RBP10.38□□□□□ -0.75
VPS39-214ENST00000614932 SOX5P35711 763 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 HCAR3P49019 387 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 HK2P52789 917 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 RAD51Q06609 339 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 SNTA1Q13424 505 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 TAF5Q15542 800 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 MTERF2Q49AM1 385 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 LDLRAP1Q5SW96 308 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 IZUMO3Q5VZ72 239 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 DENND5BQ6ZUT9 1274 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 ANKRD13AQ8IZ07 590 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 ZCCHC9Q8N567 271 aaKnown RBP10.38□□□□□ -0.75
VPS39-214ENST00000614932 TMEM246Q9BRR3 403 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 PI4K2AQ9BTU6 479 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 ANKRD60Q9BZ19 345 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 GPR88Q9GZN0 384 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 IFT22Q9H7X7 185 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 POLR1BQ9H9Y6 1135 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 XPNPEP1Q9NQW7 623 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 DMAC2Q9NW81 257 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 TNFRSF10DQ9UBN6 386 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 ENPP5Q9UJA9 477 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 DENND3A2RUS2 1198 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 WDR64B1ANS9 1081 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 BET1O15155 118 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 PDPK1O15530 556 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 LPXNO60711 386 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 DEAF1O75398 565 aaPredicted RBP10.38□□□□□ -0.75
VPS39-214ENST00000614932 PAHP00439 452 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 ATF4P18848 351 aaPredicted RBP10.38□□□□□ -0.75
VPS39-214ENST00000614932 PSMC5P62195 406 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 SP2Q02086 613 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 RHAGQ02094 409 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 VAC14Q08AM6 782 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 MGAT5BQ3V5L5 792 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 C5orf22Q49AR2 442 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 TTC33Q6PID6 262 aaPredicted RBP10.38□□□□□ -0.75
VPS39-214ENST00000614932 KIAA0408Q6ZU52 694 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 MOB2Q70IA6 237 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 SNX29P2Q8IUI4 249 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 CADM2Q8N3J6 435 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 CHAC2Q8WUX2 184 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 ZNF668Q96K58 619 aaPredicted RBP10.38□□□□□ -0.75
VPS39-214ENST00000614932 ACCSQ96QU6 501 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 C17orf62Q9BQA9 187 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 C1QTNF7Q9BXJ2 289 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 THAP2Q9H0W7 228 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 RAD21L1Q9H4I0 556 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 ATP13A3Q9H7F0 1226 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 LIN7BQ9HAP6 207 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 AKIP1Q9NQ31 210 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 IGSF5Q9NSI5 407 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 TBC1D22BQ9NU19 505 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 NXF1Q9UBU9 619 aaKnown RBP10.38□□□□□ -0.75
VPS39-214ENST00000614932 APEX2Q9UBZ4 518 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 PSME2Q9UL46 239 aa10.38□□□□□ -0.75
VPS39-214ENST00000614932 ZNF214Q9UL59 606 aaPredicted RBP10.38□□□□□ -0.75
VPS39-214ENST00000614932 PRSS51A0A1B0GVH4 220 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 ANKRD62A6NC57 917 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 LRRIQ4A6NIV6 560 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 CCNKO75909 580 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 ALDH1A2O94788 518 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 DDNO94850 711 aaPredicted RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 ADSSP30520 456 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 GRIK1P39086 918 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 ETV4P43268 484 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 NPTX2P47972 431 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 RAD23AP54725 363 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 SRP54P61011 504 aaKnown RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 EPC2Q52LR7 807 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 SEZ6Q53EL9 994 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TREML2Q5T2D2 321 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 DCAF15Q66K64 600 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 CCDC60Q8IWA6 550 aaPredicted RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 ADGRG5Q8IZF4 528 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms