RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 NUF2Q9BZD4 464 aa20.56■□□□□ 0.88
SHKBP1-225ENST00000600733 KLHL4Q9C0H6 718 aa20.56■□□□□ 0.88
SHKBP1-225ENST00000600733 DRC3Q9H069 523 aa20.56■□□□□ 0.88
SHKBP1-225ENST00000600733 RAP2CQ9Y3L5 183 aa20.56■□□□□ 0.88
SHKBP1-225ENST00000600733 MRPL42Q9Y6G3 142 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-225ENST00000600733 DOCK3Q8IZD9 2030 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 HDAC3O15379 428 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 H2AFYO75367 372 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 MT-CYBP00156 380 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 SLC35E2BP0CK96 405 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 SRGAP2BP0DMP2 458 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 RPL14P50914 215 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 BEX3Q00994 111 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 SEL1L3Q68CR1 1132 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 NAPEPLDQ6IQ20 393 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 SLC30A9Q6PML9 568 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 KBTBD6Q86V97 674 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 ZNF419Q96HQ0 510 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 VAT1Q99536 393 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 UNKQ9C0B0 810 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 RHOJQ9H4E5 214 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 ZDHHC7Q9NXF8 308 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 ZDHHC2Q9UIJ5 367 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 ZNF189O75820 626 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 AHSGP02765 367 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 JUNP05412 331 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 CXCR3P49682 368 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 POU6F1Q14863 301 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 TMEM198Q66K66 360 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 SLC41A1Q8IVJ1 513 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 DENND6AQ8IWF6 608 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 CENPLQ8N0S6 344 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 SPATA6LQ8N4H0 392 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 GBP5Q96PP8 586 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 TRAPPC9Q96Q05 1148 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 GAD1Q99259 594 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 KIFC1Q9BW19 673 aa20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 RUVBL2Q9Y230 463 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-225ENST00000600733 DFFAO00273 331 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 GRID2O43424 1007 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 MYL3P08590 195 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 TFEBP19484 476 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 MPP1Q00013 466 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 CTBP1Q13363 440 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 PRPSAP1Q14558 356 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 C9orf131Q5VYM1 1079 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 RWDD4Q6NW29 188 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 ACAD11Q709F0 780 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 TAC4Q86UU9 113 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 FSTL5Q8N475 847 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 RNF34Q969K3 372 aa20.54■□□□□ 0.88
SHKBP1-225ENST00000600733 UNCXA6NJT0 531 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 APOA4P06727 396 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 LHX1P48742 406 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 PAPOLAP51003 745 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 DLG1Q12959 904 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 TMC7Q7Z402 723 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 LPPQ93052 612 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 FTHL17Q9BXU8 183 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 F9P00740 461 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 THRAP10827 490 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 MARK4Q96L34 752 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 TSNARE1Q96NA8 513 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 PAAF1Q9BRP4 392 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 SIK2Q9H0K1 926 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 MIOSQ9NXC5 875 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 MID2Q9UJV3 735 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 ANKRD6Q9Y2G4 727 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 SLC45A1Q9Y2W3 748 aa20.53■□□□□ 0.88
SHKBP1-225ENST00000600733 HAS3O00219 553 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 CABYRO75952 493 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 VAPBO95292 243 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 UQCRBP14927 111 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 MSX2P35548 267 aaPredicted RBP20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 HADHAP40939 763 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 PM20D1Q6GTS8 502 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 CEP97Q8IW35 865 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 MFSD6LQ8IWD5 586 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 DSELQ8IZU8 1212 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 IPMKQ8NFU5 416 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 RDH11Q8TC12 318 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 STYXQ8WUJ0 223 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 CNDP1Q96KN2 507 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 CATSPER2Q96P56 530 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 VCX3BQ9H321 246 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 FLRT1Q9NZU1 646 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 XPR1Q9UBH6 696 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 RGSL1A5PLK6 1076 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 POLE2P56282 527 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 MED21Q13503 144 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 SLC12A1Q13621 1099 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 NXNQ6DKJ4 435 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 DCLRE1AQ6PJP8 1040 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 LSMEM2Q8N112 164 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 SMARCD1Q96GM5 515 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 OMDQ99983 421 aa20.52■□□□□ 0.88
SHKBP1-225ENST00000600733 MYLKQ15746 1914 aa20.52■□□□□ 0.87
SHKBP1-225ENST00000600733 CASTOR2A6NHX0 329 aa20.51■□□□□ 0.87
SHKBP1-225ENST00000600733 DLX3O60479 287 aa20.51■□□□□ 0.87
SHKBP1-225ENST00000600733 DDHD2O94830 711 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms