RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 IGF2RP11717 2491 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 SPAARA0A1B0GVQ0 90 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 WASH4PA8MWX3 477 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 KCNK3O14649 394 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 SLC7A4O43246 635 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 BNIP3LO60238 219 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 SH3BP5O60239 455 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 FTLP02792 175 aaPredicted RBP12.4□□□□□ -0.42
LIG1-217ENST00000599165 GYPCP04921 128 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 CTSKP43235 329 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 AFF3P51826 1226 aaKnown RBP12.4□□□□□ -0.42
LIG1-217ENST00000599165 ATXN3P54252 364 aaPredicted RBP12.4□□□□□ -0.42
LIG1-217ENST00000599165 UBASH3AP57075 661 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 SHC2P98077 582 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 KLHL30Q0D2K2 578 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 RWDD4Q6NW29 188 aaKnown RBP12.4□□□□□ -0.42
LIG1-217ENST00000599165 SCYL2Q6P3W7 929 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 RTL3Q8N8U3 475 aaKnown RBP12.4□□□□□ -0.42
LIG1-217ENST00000599165 TMIEQ8NEW7 156 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 BAHD1Q8TBE0 780 aaPredicted RBP12.4□□□□□ -0.42
LIG1-217ENST00000599165 CNTNAP3BQ96NU0 1288 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 CNTNAP3Q9BZ76 1288 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 GAREM1Q9H706 876 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 IFNKQ9P0W0 207 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 ANKRD6Q9Y2G4 727 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 LRRK1Q38SD2 2015 aa12.4□□□□□ -0.42
LIG1-217ENST00000599165 AKAP13Q12802 2813 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 PLXNB3Q9ULL4 1909 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 CXorf51AA0A1B0GTR3 108 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 LRRC72A6NJI9 287 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 H0Y8X5 98 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 VILLO15195 856 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 SPINT1O43278 529 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 ZNF883P0CG24 379 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 TCF4P15884 667 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 GKP32189 559 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 RACK1P63244 317 aaKnown RBP12.39□□□□□ -0.43
LIG1-217ENST00000599165 SLC14A1Q13336 389 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 SHBQ15464 509 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 ZNF423Q2M1K9 1284 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 ARSIQ5FYB1 569 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 RETSATQ6NUM9 610 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 DCUN1D2Q6PH85 259 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 LEKR1Q6ZMV7 388 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 DSG4Q86SJ6 1040 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 NETO2Q8NC67 525 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 GRIN3AQ8TCU5 1115 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 FNIP1Q8TF40 1166 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 SYN2Q92777 582 aaPredicted RBP12.39□□□□□ -0.43
LIG1-217ENST00000599165 SNRNP25Q9BV90 132 aaKnown RBP12.39□□□□□ -0.43
LIG1-217ENST00000599165 CEP44Q9C0F1 390 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 MAGEH1Q9H213 219 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 RETREG1Q9H6L5 497 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 PARVAQ9NVD7 372 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 CNOT8Q9UFF9 292 aaKnown RBP12.39□□□□□ -0.43
LIG1-217ENST00000599165 CAPN11Q9UMQ6 739 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 BTBD3Q9Y2F9 522 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 PTPRBP23467 1997 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 FRYQ5TBA9 3013 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 ANKRD36A6QL64 1941 aa12.39□□□□□ -0.43
LIG1-217ENST00000599165 KMT2BQ9UMN6 2715 aaPredicted RBP12.39□□□□□ -0.43
LIG1-217ENST00000599165 CACNA1BQ00975 2339 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 A0A087X0T9 212 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 C1QTNF3-AMACRE9PGA6 284 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 KDELR3O43731 214 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 CREB3O43889 395 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 RAMP2O60895 175 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 LRCH4O75427 683 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 LEFTY1O75610 366 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 FAM228BP0C875 321 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 SPINK2P20155 84 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 PSMA2P25787 234 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 IL1R2P27930 398 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 EPHB2P29323 1055 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 CCNHP51946 323 aaPredicted RBP12.38□□□□□ -0.43
LIG1-217ENST00000599165 AIF1P55008 147 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 SLC20A2Q08357 652 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 SFSWAPQ12872 951 aaKnown RBP12.38□□□□□ -0.43
LIG1-217ENST00000599165 CARD16Q5EG05 197 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 EFHC2Q5JST6 749 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 PRAMEF14Q5SWL7 426 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 FAM46CQ5VWP2 391 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 TRIM69Q86WT6 500 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 NAXDQ8IW45 347 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 UMODL1-AS1Q8N2C9 162 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 PCDH20Q8N6Y1 951 aaKnown RBP12.38□□□□□ -0.43
LIG1-217ENST00000599165 OR6K2Q8NGY2 324 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 ISG20Q96AZ6 181 aaKnown RBP12.38□□□□□ -0.43
LIG1-217ENST00000599165 ZNF653Q96CK0 615 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 HMCESQ96FZ2 354 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 KCTD15Q96SI1 283 aaPredicted RBP12.38□□□□□ -0.43
LIG1-217ENST00000599165 TMEM121BQ9BXQ6 578 aaPredicted RBP12.38□□□□□ -0.43
LIG1-217ENST00000599165 TM6SF2Q9BZW4 377 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 XPO4Q9C0E2 1151 aaKnown RBP12.38□□□□□ -0.43
LIG1-217ENST00000599165 KDM4CQ9H3R0 1056 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 LRRC19Q9H756 370 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 CAAP1Q9H8G2 361 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 PDFQ9HBH1 243 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 TM7SF3Q9NS93 570 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 IL36AQ9UHA7 158 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms