RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 AWAT2Q6E213 333 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 SLC16A12Q6ZSM3 486 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 HORMAD2Q8N7B1 307 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 KDM1BQ8NB78 822 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 USP13Q92995 863 aaPredicted RBP4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 ZNF333Q96JL9 665 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 ISCUQ9H1K1 167 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 SIRT3Q9NTG7 399 aaPredicted RBP4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 GRHL1Q9NZI5 618 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 FBXO40Q9UH90 709 aa4.89□□□□□ -1.63
SMCHD1-204ENST00000581226 C17orf102A2RUQ5 167 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 DDTLA6NHG4 134 aaPredicted RBP4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 CD8B2A6NJW9 211 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 FAM90A7PA6NKC0 464 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 FAM90A22PA8MWA6 464 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 FAM90A12PA8MX19 464 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 FAM90A23PA8MXZ1 464 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 NPHP1O15259 732 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 KIF1CO43896 1103 aaKnown RBP4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 PYGLP06737 847 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 PGM1P36871 562 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 DPP6P42658 865 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 TLE2Q04725 743 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 PKP1Q13835 747 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 NAA25Q14CX7 972 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 SLC18A3Q16572 532 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 ODF3L2Q3SX64 289 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 FBXO43Q4G163 708 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 TRIM74Q86UV6 250 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 TRIM73Q86UV7 250 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 DNAAF1Q8NEP3 725 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 HSPH1Q92598 858 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 ZBTB9Q96C00 473 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 WDR77Q9BQA1 342 aaPredicted RBP4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 CLSTN3Q9BQT9 956 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 ATP8A2Q9NTI2 1148 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 TMEM160Q9NX00 188 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 GGA3Q9NZ52 723 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 CNPY2Q9Y2B0 182 aa4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 LRRFIP2Q9Y608 721 aaKnown RBP4.88□□□□□ -1.63
SMCHD1-204ENST00000581226 HSPB6O14558 160 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 ADAP00813 363 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 SERPINC1P01008 464 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 CHRM4P08173 479 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 CHRNB2P17787 502 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 YWHAQP27348 245 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 RFC1P35251 1148 aaPredicted RBP4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 P2RX3P56373 397 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 TRPC3Q13507 836 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 RPE65Q16518 533 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 NFIL3Q16649 462 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 DAB2IPQ5VWQ8 1189 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 TBC1D9BQ66K14 1250 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 TMEM71Q6P5X7 295 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 TECPR1Q7Z6L1 1165 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 CTU1Q7Z7A3 348 aaKnown RBP4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 ADGRG6Q86SQ4 1221 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 SERPINA11Q86U17 422 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 ZDHHC23Q8IYP9 409 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 ENGASEQ8NFI3 743 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 NSMCE1Q8WV22 266 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 CNOT9Q92600 299 aaKnown RBP4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 POLDIP3Q9BY77 421 aaKnown RBP4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 GPR63Q9BZJ6 419 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 LMAN2LQ9H0V9 348 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 ENTPD7Q9NQZ7 604 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 SEL1LQ9UBV2 794 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 HSF4Q9ULV5 492 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 CLDN16Q9Y5I7 305 aa4.87□□□□□ -1.63
SMCHD1-204ENST00000581226 RPS10-NUDT3A0A1W2PQS6 291 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 FAM157AC9JC47 383 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 GUCY1B2O75343 617 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 CYP1A2P05177 515 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 IFIT1P09914 478 aaKnown RBP4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 MYZAPP0CAP1 466 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 HOXB2P14652 356 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 AVPR1AP37288 418 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 RASSF2P50749 326 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 POLGP54098 1239 aaPredicted RBP4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 ME3Q16798 604 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 EPHA10Q5JZY3 1008 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 HEPHL1Q6MZM0 1159 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 RETSATQ6NUM9 610 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 Q6ZTK2 550 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 LRRC8DQ7L1W4 858 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 Q8N9P0 234 aaPredicted RBP4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 LSM14AQ8ND56 463 aaKnown RBP4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 C7orf57Q8NEG2 295 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 RFWD2Q8NHY2 731 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 GABPB2Q8TAK5 448 aaPredicted RBP4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 CEP76Q8TAP6 659 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 RAB40AQ8WXH6 277 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 ATOH1Q92858 354 aaPredicted RBP4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 PHF7Q9BWX1 381 aaPredicted RBP4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 SLC32A1Q9H598 525 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 EPHX3Q9H6B9 360 aa4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 KRCC1Q9NPI7 259 aaPredicted RBP4.86□□□□□ -1.63
SMCHD1-204ENST00000581226 CNOT7Q9UIV1 285 aaKnown RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms