RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 AFMIDQ63HM1 303 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 ARHGAP12Q8IWW6 846 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 HDDC3Q8N4P3 179 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 C1orf216Q8TAB5 229 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 PIP4K2CQ8TBX8 421 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 GANCQ8TET4 914 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 FOXJ1Q92949 421 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 EIF3CQ99613 913 aaKnown RBP20.52■□□□□ 0.88
SS18-218ENST00000581021 ORAI3Q9BRQ5 295 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 CEP44Q9C0F1 390 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 ETNK2Q9NVF9 386 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 UVRAGQ9P2Y5 699 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 EVLQ9UI08 416 aaPredicted RBP20.52■□□□□ 0.88
SS18-218ENST00000581021 FZD4Q9ULV1 537 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.52■□□□□ 0.88
SS18-218ENST00000581021 WASF2Q9Y6W5 498 aa20.52■□□□□ 0.88
SS18-218ENST00000581021 MEI4A8MW99 385 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 IGHV4-34P06331 123 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 CHRNA3P32297 505 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 HOXD12P35452 270 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 ADPRHP54922 357 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 SLC20A2Q08357 652 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 CNTN1Q12860 1018 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 SERINC3Q13530 473 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 PARP15Q460N3 678 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 AASDHQ4L235 1098 aaPredicted RBP20.51■□□□□ 0.87
SS18-218ENST00000581021 AGBL4Q5VU57 503 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 POLNQ7Z5Q5 900 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 C12orf50Q8NA57 414 aaPredicted RBP20.51■□□□□ 0.87
SS18-218ENST00000581021 GRIN3AQ8TCU5 1115 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 TEKT4Q8WW24 435 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 TSC1Q92574 1164 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 BIRC7Q96CA5 298 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 NCAPGQ9BPX3 1015 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 TM6SF2Q9BZW4 377 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 SLC39A8Q9C0K1 460 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 PDFQ9HBH1 243 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 SGK2Q9HBY8 427 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 CAPN10Q9HC96 672 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 PCDH18Q9HCL0 1135 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 DLL3Q9NYJ7 618 aa20.51■□□□□ 0.87
SS18-218ENST00000581021 CXorf51AA0A1B0GTR3 108 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 KHNYNO15037 678 aaKnown RBP20.5■□□□□ 0.87
SS18-218ENST00000581021 CD48P09326 243 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 FECHP22830 423 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 GKP32189 559 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 HCAR3P49019 387 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 ARSEP51690 589 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 YBEYP58557 167 aaPredicted RBP20.5■□□□□ 0.87
SS18-218ENST00000581021 ATP13A4Q4VNC1 1196 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 BOLA3Q53S33 107 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 SLC23A3Q6PIS1 610 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 NCEH1Q6PIU2 408 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 ARHGAP36Q6ZRI8 547 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 DSG4Q86SJ6 1040 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 ZCCHC9Q8N567 271 aaKnown RBP20.5■□□□□ 0.87
SS18-218ENST00000581021 PCDH20Q8N6Y1 951 aaKnown RBP20.5■□□□□ 0.87
SS18-218ENST00000581021 OR6K2Q8NGY2 324 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 SLC35G2Q8TBE7 412 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 ARRDC3Q96B67 414 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 CSPG4P5Q96PW8 444 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 OMDQ99983 421 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 EDEM2Q9BV94 578 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 PCED1AQ9H1Q7 454 aa20.5■□□□□ 0.87
SS18-218ENST00000581021 EIF2B4Q9UI10 523 aaKnown RBP20.5■□□□□ 0.87
SS18-218ENST00000581021 CACNA1AO00555 2505 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 FAM47DPA6NHR8 397 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 PRR5-ARHGAP8B1AHC4 643 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 J3KR12 359 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 BUB1O43683 1085 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 TMCC1O94876 653 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 IL4RP24394 825 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 PI4KAP42356 2102 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 CCNHP51946 323 aaPredicted RBP20.49■□□□□ 0.87
SS18-218ENST00000581021 TAS2R38P59533 333 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 ARHGAP8P85298 464 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 ARSIQ5FYB1 569 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 ATXN7L2Q5T6C5 722 aaPredicted RBP20.49■□□□□ 0.87
SS18-218ENST00000581021 PIP5KL1Q5T9C9 394 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.49■□□□□ 0.87
SS18-218ENST00000581021 RGL4Q8IZJ4 473 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 FAM71BQ8TC56 605 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 NETO1Q8TDF5 533 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 EBF2Q9HAK2 575 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 KLHL11Q9NVR0 708 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 TFR2Q9UP52 801 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 NCKAP1Q9Y2A7 1128 aa20.49■□□□□ 0.87
SS18-218ENST00000581021 TMEM110-MUSTN1A8MSY1 372 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 H3BRJ5 948 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 CDX4O14627 284 aaPredicted RBP20.48■□□□□ 0.87
SS18-218ENST00000581021 LEFTY1O75610 366 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 MTA2O94776 668 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 FSBPO95073 299 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 LCA5LO95447 670 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 CFIP05156 583 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 AMPD1P23109 780 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 GJC1P36383 396 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 PAPOLAP51003 745 aaKnown RBP20.48■□□□□ 0.87
SS18-218ENST00000581021 DNA2P51530 1060 aa20.48■□□□□ 0.87
SS18-218ENST00000581021 NDST2P52849 883 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms