RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CPT1BQ92523 772 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ANKRD7Q92527 254 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 CAVIN3Q969G5 261 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 TTC17Q96AE7 1141 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 FMO2Q99518 471 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 SLC25A51Q9H1U9 297 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 GLOD4Q9HC38 313 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 ABCB8Q9NUT2 735 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 SEPT10Q9P0V9 454 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 RSPH14Q9UHP6 348 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 GGA2Q9UJY4 613 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 NFU1Q9UMS0 254 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 DENND4AQ7Z401 1863 aa15.56■□□□□ 0.08
SS18-215ENST00000580642 CHD5Q8TDI0 1954 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 E7EVH7 732 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 H3BQ06 376 aaPredicted RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 TP73O15350 636 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 EIF3HO15372 352 aaKnown RBP eCLIP15.55■□□□□ 0.08
SS18-215ENST00000580642 ZBTB24O43167 697 aaPredicted RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 SUN1O94901 812 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 ASLP04424 464 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 PABPC1P11940 636 aaKnown RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 MLNP12872 115 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 MZF1P28698 734 aaPredicted RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 HLA-FP30511 346 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 VPS41P49754 854 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 RUNX3Q13761 415 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 ZNF235Q14590 738 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 KCNJ11Q14654 390 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 EIF4HQ15056 248 aaKnown RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 SMAD2Q15796 467 aaKnown RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 PITRM1Q5JRX3 1037 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 PARM1Q6UWI2 310 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 SUGP1Q8IWZ8 645 aaKnown RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 KDM1BQ8NB78 822 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 FBXO25Q8TCJ0 367 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 AENQ8WTP8 325 aaKnown RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 ISG20Q96AZ6 181 aaKnown RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 AGAP3Q96P47 875 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 POLR1EQ9GZS1 481 aaKnown RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 ETNK1Q9HBU6 452 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 XAB2Q9HCS7 855 aaKnown RBP15.55■□□□□ 0.08
SS18-215ENST00000580642 ARFGAP3Q9NP61 516 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 VPS51Q9UID3 782 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 HS3ST2Q9Y278 367 aa15.55■□□□□ 0.08
SS18-215ENST00000580642 CBX4O00257 560 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 METTL18O95568 372 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 MAPK8P45983 427 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 CSNK1DP48730 415 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 DGKGP49619 791 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 GEMP55040 296 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 BASP1P80723 227 aaKnown RBP15.54■□□□□ 0.08
SS18-215ENST00000580642 ARF5P84085 180 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 SLC10A7Q0GE19 358 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 SKIV2LQ15477 1246 aaKnown RBP15.54■□□□□ 0.08
SS18-215ENST00000580642 ITPRIPL2Q3MIP1 535 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 NUDT18Q6ZVK8 323 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 B4GALNT4Q76KP1 1039 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 LINC00523Q86TU6 105 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 PLPP6Q8IY26 295 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 NETO2Q8NC67 525 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 PRCCQ92733 491 aaPredicted RBP15.54■□□□□ 0.08
SS18-215ENST00000580642 FGF14Q92915 247 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 ASIC4Q96FT7 647 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 IMP4Q96G21 291 aaKnown RBP15.54■□□□□ 0.08
SS18-215ENST00000580642 MGME1Q9BQP7 344 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 CINPQ9BW66 212 aaPredicted RBP15.54■□□□□ 0.08
SS18-215ENST00000580642 CEP44Q9C0F1 390 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 EBF3Q9H4W6 596 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 HPS4Q9NQG7 708 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 PLK2Q9NYY3 685 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 DEC1Q9P2X7 70 aa15.54■□□□□ 0.08
SS18-215ENST00000580642 ARNTLO00327 626 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 AP2A1O95782 977 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 EPOP01588 193 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 ATP5BP06576 529 aaKnown RBP15.53■□□□□ 0.08
SS18-215ENST00000580642 APRTP07741 180 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 CISD3P0C7P0 127 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 ARSAP15289 507 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 CD70P32970 193 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 CD68P34810 354 aaPredicted RBP15.53■□□□□ 0.08
SS18-215ENST00000580642 SERPINH1P50454 418 aaKnown RBP15.53■□□□□ 0.08
SS18-215ENST00000580642 MPP3Q13368 585 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 TRADDQ15628 312 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 PRUNE1Q86TP1 453 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 PDIK1LQ8N165 341 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 MREGQ8N565 214 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 WFDC5Q8TCV5 224 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 BHMTQ93088 406 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 TADA1Q96BN2 335 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 LRRC39Q96DD0 335 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 MSANTD3Q96H12 275 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 PKNOX2Q96KN3 472 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 LRRC40Q9H9A6 602 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 DNAJC17Q9NVM6 304 aaKnown RBP15.53■□□□□ 0.08
SS18-215ENST00000580642 CLEC4EQ9ULY5 219 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 NUMBLQ9Y6R0 609 aa15.53■□□□□ 0.08
SS18-215ENST00000580642 KIF26AQ9ULI4 1882 aaPredicted RBP15.52■□□□□ 0.08
SS18-215ENST00000580642 DOCK8Q8NF50 2099 aa15.52■□□□□ 0.08
SS18-215ENST00000580642 TULP3O75386 442 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms