RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 YWHAQP27348 245 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 CDKN2AP42771 156 aaKnown RBP6.79□□□□□ -1.32
SS18-214ENST00000580003 RFX2P48378 723 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 HTR6P50406 440 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 PKP1Q13835 747 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 SH2D4BQ5SQS7 431 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 OTUD1Q5VV17 481 aaPredicted RBP6.79□□□□□ -1.32
SS18-214ENST00000580003 DCAF12L2Q5VW00 463 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 SERPINA11Q86U17 422 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 CADM3Q8N126 398 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 GHDCQ8N2G8 530 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 SH3KBP1Q96B97 665 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 PSMD1Q99460 953 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 POLDIP3Q9BY77 421 aaKnown RBP6.79□□□□□ -1.32
SS18-214ENST00000580003 SEL1LQ9UBV2 794 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 GPR52Q9Y2T5 361 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 PEX12O00623 359 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 HSPB6O14558 160 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 TSPAN3O60637 253 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 IL1AP01583 271 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 MMP3P08254 477 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 ENO3P13929 434 aaPredicted RBP6.78□□□□□ -1.32
SS18-214ENST00000580003 HNF1BP35680 557 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 DPP6P42658 865 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 SELENOVP59797 346 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 ZP1P60852 638 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 ROR2Q01974 943 aaKnown RBP6.78□□□□□ -1.32
SS18-214ENST00000580003 RAPGEF1Q13905 1077 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 INO80DQ53TQ3 878 aaPredicted RBP6.78□□□□□ -1.32
SS18-214ENST00000580003 TMEM71Q6P5X7 295 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 GJB7Q6PEY0 223 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 CEP76Q8TAP6 659 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 LYZL4Q96KX0 146 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 KLHL31Q9H511 634 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 TTC12Q9H892 705 aaPredicted RBP6.78□□□□□ -1.32
SS18-214ENST00000580003 PLAC1Q9HBJ0 212 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 INSL5Q9Y5Q6 135 aa6.78□□□□□ -1.32
SS18-214ENST00000580003 VWA3AA6NCI4 1184 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 DDTLA6NHG4 134 aaPredicted RBP6.77□□□□□ -1.33
SS18-214ENST00000580003 KLK10O43240 276 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 CDH12P55289 794 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 ZRSR2Q15696 482 aaKnown RBP6.77□□□□□ -1.33
SS18-214ENST00000580003 DUSP6Q16828 381 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 PALB2Q86YC2 1186 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 TMC8Q8IU68 726 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 SETD9Q8NE22 299 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 MORC4Q8TE76 937 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 SLC35F5Q8WV83 523 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 OIT3Q8WWZ8 545 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 STAMQ92783 540 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 URB1-AS1Q96HZ7 61 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 CAMK1GQ96NX5 476 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 TWNKQ96RR1 684 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 PLK2Q9NYY3 685 aa6.77□□□□□ -1.33
SS18-214ENST00000580003 MS4A18H0YCH9 400 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 SPRY3O43610 288 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 HSD3B1P14060 373 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 ARRB2P32121 409 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 MLH1P40692 756 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 PPP3CCP48454 512 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 CCT5P48643 541 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 DHX8Q14562 1220 aaKnown RBP6.76□□□□□ -1.33
SS18-214ENST00000580003 TAF12Q16514 161 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 DNTTIP2Q5QJE6 756 aaKnown RBP6.76□□□□□ -1.33
SS18-214ENST00000580003 NCAPH2Q6IBW4 605 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.76□□□□□ -1.33
SS18-214ENST00000580003 TRIM74Q86UV6 250 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 TRIM73Q86UV7 250 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 CXorf56Q9H5V9 222 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 STN1Q9H668 368 aaKnown RBP6.76□□□□□ -1.33
SS18-214ENST00000580003 CNPY2Q9Y2B0 182 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 DGKBQ9Y6T7 804 aa6.76□□□□□ -1.33
SS18-214ENST00000580003 A0A096LPK6 155 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 OR6C75A6NL08 312 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 BECN2A8MW95 431 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 PROB1E7EW31 1015 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 EYA2O00167 538 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 PTPN9P43378 593 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 PPM1FP49593 454 aaPredicted RBP6.75□□□□□ -1.33
SS18-214ENST00000580003 THBS3P49746 956 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 KRTAP1-1Q07627 177 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 TBC1D9BQ66K14 1250 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 FBXL14Q8N1E6 418 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 DNAAF1Q8NEP3 725 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 HSPH1Q92598 858 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 ATOH1Q92858 354 aaPredicted RBP6.75□□□□□ -1.33
SS18-214ENST00000580003 GCC1Q96CN9 775 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 NAF1Q96HR8 494 aaKnown RBP6.75□□□□□ -1.33
SS18-214ENST00000580003 THOC3Q96J01 351 aaKnown RBP6.75□□□□□ -1.33
SS18-214ENST00000580003 MARK4Q96L34 752 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 GFM1Q96RP9 751 aaKnown RBP6.75□□□□□ -1.33
SS18-214ENST00000580003 REEP2Q9BRK0 252 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 NTPCRQ9BSD7 190 aaKnown RBP6.75□□□□□ -1.33
SS18-214ENST00000580003 DCLK3Q9C098 648 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 RIC8AQ9NPQ8 531 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 ENTPD7Q9NQZ7 604 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 ATP8A2Q9NTI2 1148 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 NLKQ9UBE8 527 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 HDAC6Q9UBN7 1215 aa6.75□□□□□ -1.33
SS18-214ENST00000580003 FZD10Q9ULW2 581 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms