RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 DMXL2Q8TDJ6 3036 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 UBN2Q6ZU65 1347 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 SH2D7A6NKC9 451 aaPredicted RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 SRRM3A6NNA2 597 aaPredicted RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 MUSKO15146 869 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 METTL18O95568 372 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 POMCP01189 267 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 QDPRP09417 244 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 ATXN1LP0C7T5 689 aaKnown RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 VSIG10L2P0DP72 767 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 ACP5P13686 325 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 HK1P19367 917 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 GRK5P34947 590 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 CLCN2P51788 898 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 PGDP52209 483 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 DGKEP52429 567 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 ZNF131P52739 623 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 RABGGTBP53611 331 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 RRADP55042 308 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 ATP2C1P98194 919 aaPredicted RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 SATB1Q01826 763 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 BFSP1Q12934 665 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 PPIGQ13427 754 aaKnown RBP eCLIP6.1□□□□□ -1.433e-7■■□□□ 12.6
VPS53-219ENST00000576019 ANKRD40Q6AI12 368 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 TTI2Q6NXR4 508 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 DENND1BQ6P3S1 775 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 MTFR2Q6P444 385 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 TRMT10BQ6PF06 316 aaKnown RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 PSRC1Q6PGN9 363 aaPredicted RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 LAYNQ6UX15 382 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 SLC30A10Q6XR72 485 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 RAPH1Q70E73 1250 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 ZDHHC13Q8IUH4 622 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 FSTL5Q8N475 847 aaPredicted RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 SMARCC2Q8TAQ2 1214 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 TBC1D16Q8TBP0 767 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 SH3RF3Q8TEJ3 882 aaPredicted RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 CPA5Q8WXQ8 436 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 LPAR1Q92633 364 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 REXO5Q96IC2 774 aaKnown RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 PHACTR3Q96KR7 559 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 RPL10LQ96L21 214 aaKnown RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 PPP1R10Q96QC0 940 aaKnown RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 WDR24Q96S15 920 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 WRNIP1Q96S55 665 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 GORASP1Q9BQQ3 440 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 HGH1Q9BTY7 390 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 KLHL4Q9C0H6 718 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 ANKRD2Q9GZV1 360 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 CXorf36Q9H7Y0 433 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 BEX4Q9NWD9 120 aaPredicted RBP6.1□□□□□ -1.43
VPS53-219ENST00000576019 PPP1R14DQ9NXH3 145 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 ALKBH4Q9NXW9 302 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 KCND2Q9NZV8 630 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 RAB21Q9UL25 225 aa6.1□□□□□ -1.43
VPS53-219ENST00000576019 MYO3BQ8WXR4 1341 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 PRR19A6NJB7 356 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 TMEM232C9JQI7 657 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 HNRNPCL1O60812 293 aaKnown RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 ADAM23O75077 832 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 GGPS1O95749 300 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 MT-ND3P03897 115 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 JUNP05412 331 aaKnown RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 ITGB1P05556 798 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 THEGLP0DJG4 465 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 RBL1P28749 1068 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 TLX1P31314 330 aaPredicted RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 THBS4P35443 961 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 PNPLA4P41247 253 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 CPA2P48052 419 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 PIP4K2AP48426 406 aaPredicted RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 PXNP49023 591 aaPredicted RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 ZNF41P51814 821 aaPredicted RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 CLRN1P58418 232 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 TFCP2Q12800 502 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 UBXN2BQ14CS0 331 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 NAA25Q14CX7 972 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 ZNF674Q2M3X9 581 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 ZNF766Q5HY98 468 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 TMEM196Q5HYL7 178 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 PLEKHS1Q5SXH7 462 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 ERMARDQ5T6L9 678 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 GARNL3Q5VVW2 1013 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 SUSD4Q5VX71 490 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 CLEC9AQ6UXN8 241 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 FAM83HQ6ZRV2 1179 aaPredicted RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 PIK3AP1Q6ZUJ8 805 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 ERC1Q8IUD2 1116 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 FITM2Q8N6M3 262 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 PSD4Q8NDX1 1056 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 NSUN7Q8NE18 718 aaKnown RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 RFWD2Q8NHY2 731 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 PGAP3Q96FM1 320 aaPredicted RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 ZNF668Q96K58 619 aaPredicted RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 TSPAN18Q96SJ8 248 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 CLPBQ9H078 707 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 TRPV4Q9HBA0 871 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 CPSF2Q9P2I0 782 aaKnown RBP6.09□□□□□ -1.43
VPS53-219ENST00000576019 ANAPC5Q9UJX4 755 aa6.09□□□□□ -1.43
VPS53-219ENST00000576019 SUFUQ9UMX1 484 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms