RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RNF8O76064 485 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 FSBPO95073 299 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 PLEKP08567 350 aaPredicted RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 TPM1P09493 284 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 MYBL1P10243 752 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 GZMAP12544 262 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 SRCP12931 536 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 RHOQP17081 205 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 PSMA2P25787 234 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 VARSP26640 1264 aaKnown RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 MAOBP27338 520 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 SLC8A1P32418 973 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 ACSL1P33121 698 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 MAPKAPK2P49137 400 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 GEMIN4P57678 1058 aaKnown RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 ZBED6P86452 979 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 NRG1Q02297 640 aaPredicted RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 GNA12Q03113 381 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 CCDC15Q0P6D6 951 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 COL9A2Q14055 689 aaPredicted RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 TEAD4Q15561 434 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 DLG2Q15700 870 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 SH3PXD2AQ5TCZ1 1133 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 ZNF571Q7Z3V5 609 aaPredicted RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 ZNF354CQ86Y25 554 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 DRC7Q8IY82 874 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 ZNF683Q8IZ20 524 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 STK40Q8N2I9 435 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 SH2D3CQ8N5H7 860 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 CCDC185Q8N715 623 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 PRR7Q8TB68 274 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 CENPIQ92674 756 aaPredicted RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 PTPRN2Q92932 1015 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 ZNF653Q96CK0 615 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 NCAPGQ9BPX3 1015 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 ZDHHC5Q9C0B5 715 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 TTYH3Q9C0H2 523 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 TSPY26PQ9H489 355 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 SLC32A1Q9H598 525 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 CATSPERBQ9H7T0 1116 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 MRPL47Q9HD33 250 aaKnown RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 DYRK4Q9NR20 520 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 TMPRSS4Q9NRS4 437 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 DONSONQ9NYP3 566 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 IFNKQ9P0W0 207 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 CNOT8Q9UFF9 292 aaKnown RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 VPS51Q9UID3 782 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 FZD4Q9ULV1 537 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 TPX2Q9ULW0 747 aaKnown RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 HPCAL4Q9UM19 191 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 HS3ST2Q9Y278 367 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 LUC7L2Q9Y383 392 aaKnown RBP8.29□□□□□ -1.08
VPS53-214ENST00000572607 OR51B4Q9Y5P0 310 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 FREM2Q5SZK8 3169 aa8.29□□□□□ -1.08
VPS53-214ENST00000572607 SMG1Q96Q15 3661 aaKnown RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 A0A0D9SEW6 157 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 BCAT2O15382 392 aaPredicted RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 SLC7A4O43246 635 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 CREB3O43889 395 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 SNAP91O60641 907 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 RAMP2O60895 175 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 RTN2O75298 545 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 LRIG2O94898 1065 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 FTLP02792 175 aaPredicted RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 SERPING1P05155 500 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 SKILP12757 684 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 GOT1P17174 413 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 EPHB2P29323 1055 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 RPL7AP62424 266 aaKnown RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 SLC20A2Q08357 652 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 SCAPQ12770 1279 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 MAMLD1Q13495 774 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 TRIM14Q14142 442 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 KIAA0895LQ68EN5 471 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 IL27RAQ6UWB1 636 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 Q6ZVU0 165 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 TMC6Q7Z403 805 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 ADAT2Q7Z6V5 191 aaKnown RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 OR7D4Q8NG98 312 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 OR52K2Q8NGK3 314 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 OR2T34Q8NGX1 318 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 OR14C36Q8NHC7 312 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 FRS2Q8WU20 508 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 CPLX3Q8WVH0 158 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 DNASE2BQ8WZ79 361 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 SYN2Q92777 582 aaPredicted RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 SKA1Q96BD8 255 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 ALG14Q96F25 216 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 PPP1R16AQ96I34 528 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 FAM129BQ96TA1 746 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 SYT11Q9BT88 431 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 CEP44Q9C0F1 390 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 C6orf106Q9H6K1 298 aaPredicted RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 CAPN10Q9HC96 672 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 TMEM248Q9NWD8 314 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 ZNHIT6Q9NWK9 470 aaKnown RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 TAS2R14Q9NYV8 317 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 MYO1AQ9UBC5 1043 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 EIF2B4Q9UI10 523 aaKnown RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 DNAI1Q9UI46 699 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms