RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 ZDHHC2Q9UIJ5 367 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 CNOT11Q9UKZ1 510 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 CITO14578 2027 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 BTBD19C9JJ37 291 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 LMO2P25791 158 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 AVPR1AP37288 418 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 MAP7D1Q3KQU3 841 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 TMEM198Q66K66 360 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 KRT80Q6KB66 452 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 NOTUMQ6P988 496 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ISLR2Q6UXK2 745 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 STYXQ8WUJ0 223 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 NDRG1Q92597 394 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 GFM2Q969S9 779 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 TRPV6Q9H1D0 765 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 TMPRSS4Q9NRS4 437 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 UTP6Q9NYH9 597 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 PRSS51A0A1B0GVH4 220 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 VILLO15195 856 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 GPC4O75487 556 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 F7P08709 466 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 STMN1P16949 149 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 POLD2P49005 469 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 PSME3P61289 254 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ARHGAP1Q07960 439 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 CYTH1Q15438 398 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 KIZQ2M2Z5 673 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ZC3HC1Q86WB0 502 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ALDH16A1Q8IZ83 802 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 RIN3Q8TB24 985 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 TRPM4Q8TD43 1214 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 MARK4Q96L34 752 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 PGLYRP2Q96PD5 576 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 CCT7Q99832 543 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 DUSP16Q9BY84 665 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ARHGEF37A1IGU5 675 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 GOLGA8TH3BQL2 631 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 PFDN1O60925 122 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 MYBPC1Q00872 1141 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 MS4A2Q01362 244 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 PDAP1Q13442 181 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 PIWIL4Q7Z3Z4 852 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ADAM32Q8TC27 787 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 MROH8Q9H579 483 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ACSS2Q9NR19 701 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 DDX18Q9NVP1 670 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 XPR1Q9UBH6 696 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 AP4S1Q9Y587 144 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 LOC285556D6RIA3 1793 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 FAM200BP0CF97 657 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 ZNF286BP0CG31 522 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 NPR3P17342 541 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 DGKDQ16760 1214 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 TICAM1Q8IUC6 712 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 SLC41A1Q8IVJ1 513 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 FSTL5Q8N475 847 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 B3GALNT2Q8NCR0 500 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 NTAN1Q96AB6 310 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 HNRNPABQ99729 332 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 NPAS2Q99743 824 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 OSBPL11Q9BXB4 747 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 PDGFDQ9GZP0 370 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 MRPL46Q9H2W6 279 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 COPG1Q9Y678 874 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 CCDC78A2IDD5 438 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 HEATR9A2RTY3 570 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 H0YJX3 145 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 NPHS1O60500 1241 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 RECQL4O94761 1208 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 NMBRP28336 390 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 CCR10P46092 362 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 HCAR3P49019 387 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 ZNF135P52742 658 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 RAB10P61026 200 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 PITX1P78337 314 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 CDC42EP1Q00587 391 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 ZBTB6Q15916 424 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 MYLK3Q32MK0 819 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 PABPC1LQ4VXU2 614 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 OLFML2BQ68BL8 750 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 BORAQ6PGQ7 559 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 TOP1MTQ969P6 601 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 PBXIP1Q96AQ6 731 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 HDAC11Q96DB2 347 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 ASB9Q96DX5 294 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 OTUD5Q96G74 571 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 EML4Q9HC35 981 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 CIDEBQ9UHD4 219 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 SCN1AP35498 2009 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 PTPRFP10586 1907 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 DNAJC25-GNG10A0A024R161 153 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 H3BRB1 525 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 JCHAINP01591 159 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 HSPA8P11142 646 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 TTLL12Q14166 644 aaPredicted RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 GRIK4Q16099 956 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 TP53INP2Q8IXH6 220 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 PPHLN1Q8NEY8 458 aaKnown RBP10.91□□□□□ -0.66
CCDC40-207ENST00000572253 TSPAN14Q8NG11 270 aa10.91□□□□□ -0.66
CCDC40-207ENST00000572253 ZFP28Q8NHY6 868 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms