RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PRKAG2Q9UGJ0 569 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 DNMT3LQ9UJW3 386 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 MRPL11Q9Y3B7 192 aaKnown RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 BRCA2P51587 3418 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PTPRFP10586 1907 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 EVPLLA8MZ36 301 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 FOXN3O00409 490 aaPredicted RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 MAGP20916 626 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 ADSSP30520 456 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 KYAT3Q6YP21 454 aaKnown RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 TLK2Q86UE8 772 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 CDH24Q86UP0 819 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 HID1Q8IV36 788 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 CCDC103Q8IW40 242 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 ACDQ96AP0 544 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 NACC1Q96RE7 527 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 SECISBP2Q96T21 854 aaKnown RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 YME1L1Q96TA2 773 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 MANSC1Q9H8J5 431 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PLSCR3Q9NRY6 295 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 KCND2Q9NZV8 630 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PMF1-BGLAPU3KQ54 211 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 SSC5DA1L4H1 1573 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 IQANK1A0A1B0GTG1 560 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 MAGEB16A2A368 324 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PRR5-ARHGAP8B1AHC4 643 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 DDX39AO00148 427 aaKnown RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 PRKCBP05771 671 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 KITP10721 976 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 CCNA2P20248 432 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 UQCRC1P31930 480 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 ARHGAP8P85298 464 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PPP3CAQ08209 521 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 LAMC2Q13753 1193 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 ZNF846Q147U1 533 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PLEKHG7Q6ZR37 379 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 DEFB132Q7Z7B7 95 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 THNSL1Q8IYQ7 743 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 AFAP1L2Q8N4X5 818 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 TAB3Q8N5C8 712 aaPredicted RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 TMEM35BQ8NCS4 154 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 GRPEL2Q8TAA5 225 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 MCRS1Q96EZ8 462 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 IL12RB2Q99665 862 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PAQR5Q9NXK6 330 aaPredicted RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 TEKT2Q9UIF3 430 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 DGKBQ9Y6T7 804 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 CENPXA8MT69 81 aa11□□□□□ -0.65
CLK3-226ENST00000569406 PLK4O00444 970 aa11□□□□□ -0.65
CLK3-226ENST00000569406 VWA5AO00534 786 aa11□□□□□ -0.65
CLK3-226ENST00000569406 PROCP04070 461 aa11□□□□□ -0.65
CLK3-226ENST00000569406 GZMAP12544 262 aa11□□□□□ -0.65
CLK3-226ENST00000569406 HSPA6P17066 643 aa11□□□□□ -0.65
CLK3-226ENST00000569406 NEDD8Q15843 81 aa11□□□□□ -0.65
CLK3-226ENST00000569406 SULT1C3Q6IMI6 304 aa11□□□□□ -0.65
CLK3-226ENST00000569406 NT5DC3Q86UY8 548 aa11□□□□□ -0.65
CLK3-226ENST00000569406 SYCE1Q8N0S2 351 aa11□□□□□ -0.65
CLK3-226ENST00000569406 VCPIP1Q96JH7 1222 aa11□□□□□ -0.65
CLK3-226ENST00000569406 TAAR1Q96RJ0 339 aa11□□□□□ -0.65
CLK3-226ENST00000569406 HMG20AQ9NP66 347 aa11□□□□□ -0.65
CLK3-226ENST00000569406 OSGEPQ9NPF4 335 aa11□□□□□ -0.65
CLK3-226ENST00000569406 PKD2L2Q9NZM6 624 aa11□□□□□ -0.65
CLK3-226ENST00000569406 ZNF221Q9UK13 617 aa11□□□□□ -0.65
CLK3-226ENST00000569406 COG5Q9UP83 839 aa11□□□□□ -0.65
CLK3-226ENST00000569406 RNF11Q9Y3C5 154 aa11□□□□□ -0.65
CLK3-226ENST00000569406 UBE4BO95155 1302 aa11□□□□□ -0.65
CLK3-226ENST00000569406 RAB19A4D1S5 217 aa11□□□□□ -0.65
CLK3-226ENST00000569406 MIF4GDA9UHW6 222 aaKnown RBP11□□□□□ -0.65
CLK3-226ENST00000569406 H3BNH8 94 aa11□□□□□ -0.65
CLK3-226ENST00000569406 CLPXO76031 633 aa11□□□□□ -0.65
CLK3-226ENST00000569406 PPATQ06203 517 aa11□□□□□ -0.65
CLK3-226ENST00000569406 ENPEPQ07075 957 aa11□□□□□ -0.65
CLK3-226ENST00000569406 NFATC3Q12968 1075 aa11□□□□□ -0.65
CLK3-226ENST00000569406 SLC9A4Q6AI14 798 aa11□□□□□ -0.65
CLK3-226ENST00000569406 TTC27Q6P3X3 843 aa11□□□□□ -0.65
CLK3-226ENST00000569406 NIPA1Q7RTP0 329 aa11□□□□□ -0.65
CLK3-226ENST00000569406 LRRTM3Q86VH5 581 aa11□□□□□ -0.65
CLK3-226ENST00000569406 ZCCHC7Q8N3Z6 543 aaKnown RBP11□□□□□ -0.65
CLK3-226ENST00000569406 DENND1AQ8TEH3 1009 aa11□□□□□ -0.65
CLK3-226ENST00000569406 TTC17Q96AE7 1141 aa11□□□□□ -0.65
CLK3-226ENST00000569406 CBWD1Q9BRT8 395 aa11□□□□□ -0.65
CLK3-226ENST00000569406 SCUBE2Q9NQ36 999 aa11□□□□□ -0.65
CLK3-226ENST00000569406 MARCOQ9UEW3 520 aaPredicted RBP11□□□□□ -0.65
CLK3-226ENST00000569406 POMPQ9Y244 141 aa11□□□□□ -0.65
CLK3-226ENST00000569406 C16orf96A6NNT2 1141 aa11□□□□□ -0.65
CLK3-226ENST00000569406 A8MV72 311 aaPredicted RBP11□□□□□ -0.65
CLK3-226ENST00000569406 DNALI1O14645 258 aaPredicted RBP11□□□□□ -0.65
CLK3-226ENST00000569406 TOR1BO14657 336 aa11□□□□□ -0.65
CLK3-226ENST00000569406 RAD51BO15315 384 aa11□□□□□ -0.65
CLK3-226ENST00000569406 SPAG6O75602 509 aa11□□□□□ -0.65
CLK3-226ENST00000569406 LYPLA2O95372 231 aa11□□□□□ -0.65
CLK3-226ENST00000569406 RETP07949 1114 aa11□□□□□ -0.65
CLK3-226ENST00000569406 TGM1P22735 817 aa11□□□□□ -0.65
CLK3-226ENST00000569406 RBL1P28749 1068 aa11□□□□□ -0.65
CLK3-226ENST00000569406 FMO4P31512 558 aa11□□□□□ -0.65
CLK3-226ENST00000569406 NUDT1P36639 197 aa11□□□□□ -0.65
CLK3-226ENST00000569406 GNL1P36915 607 aaPredicted RBP11□□□□□ -0.65
CLK3-226ENST00000569406 MRPS22P82650 360 aaKnown RBP11□□□□□ -0.65
CLK3-226ENST00000569406 MTM1Q13496 603 aa11□□□□□ -0.65
CLK3-226ENST00000569406 PGM5Q15124 567 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms