RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 FAM182AQ5T1J6 154 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 DCAF12L1Q5VU92 463 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 SMYD5Q6GMV2 418 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 LINGO4Q6UY18 593 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 CYP4V2Q6ZWL3 525 aaPredicted RBP14.24□□□□□ -0.13
CLN3-235ENST00000568497 FIBINQ8TAL6 211 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 SNX19Q92543 992 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 MRGPRX1Q96LB2 322 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 DDX50Q9BQ39 737 aaKnown RBP14.24□□□□□ -0.13
CLN3-235ENST00000568497 CNPY3Q9BT09 278 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 DEF6Q9H4E7 631 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 OSGEPQ9NPF4 335 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 PARVAQ9NVD7 372 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 KLHL11Q9NVR0 708 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 RRN3Q9NYV6 651 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 FTSJ1Q9UET6 329 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 EIF2B4Q9UI10 523 aaKnown RBP14.24□□□□□ -0.13
CLN3-235ENST00000568497 NEU3Q9UQ49 428 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 SLC27A6Q9Y2P4 619 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 HYOU1Q9Y4L1 999 aa14.24□□□□□ -0.13
CLN3-235ENST00000568497 A0A0U1RQJ8 604 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 A0A1B0GVT2 93 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 SOWAHDA6NJG2 315 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 TTC34A8MYJ7 566 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 K7ERQ8 282 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 CREB3O43889 395 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 LRIG2O94898 1065 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 WISP1O95388 367 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 F9P00740 461 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 SLC2A3P11169 496 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 MIPP30301 263 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 ACVRL1P37023 503 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 BNC1Q01954 994 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 TRIM14Q14142 442 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 KCNT1Q5JUK3 1230 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 STRADAQ7RTN6 431 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 KIAA0907Q7Z7F0 614 aaPredicted RBP14.23□□□□□ -0.13
CLN3-235ENST00000568497 METTL3Q86U44 580 aaKnown RBP14.23□□□□□ -0.13
CLN3-235ENST00000568497 MRGPRX3Q96LB0 322 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 KCTD15Q96SI1 283 aaPredicted RBP14.23□□□□□ -0.13
CLN3-235ENST00000568497 PSMB7Q99436 277 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 GABRG3Q99928 467 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 SPON2Q9BUD6 331 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 ZWILCHQ9H900 591 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 THAP10Q9P2Z0 257 aaPredicted RBP14.23□□□□□ -0.13
CLN3-235ENST00000568497 DNAI1Q9UI46 699 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 ANAPC7Q9UJX3 599 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 FZD10Q9ULW2 581 aa14.23□□□□□ -0.13
CLN3-235ENST00000568497 DOCK4Q8N1I0 1966 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 B8ZZF3 427 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 MT-CO1P00395 513 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 CYP1A2P05177 515 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 EPHX1P07099 455 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 RHOCP08134 193 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 TPM1P09493 284 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 POLR2EP19388 210 aaKnown RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 SSR1P43307 286 aaKnown RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 CSNK1EP49674 416 aaKnown RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 TLE3Q04726 772 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 ZNF177Q13360 481 aaPredicted RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 MAPK8IP2Q13387 824 aaPredicted RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 SLC18A3Q16572 532 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 POM121L1PQ3SYA9 428 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 ATP13A4Q4VNC1 1196 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 RABGAP1LQ5R372 815 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 SERPINA13PQ6UXR4 307 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 ARCQ7LC44 396 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 SLFN11Q7Z7L1 901 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 TP53INP2Q8IXH6 220 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.22□□□□□ -0.13
CLN3-235ENST00000568497 CADM4Q8NFZ8 388 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 SNIP1Q8TAD8 396 aaKnown RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 ALG14Q96F25 216 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 MYO19Q96H55 970 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 SNRNP25Q9BV90 132 aaKnown RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 KLC2Q9H0B6 622 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 GOLPH3Q9H4A6 298 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 DHX35Q9H5Z1 703 aaKnown RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 ZNHIT6Q9NWK9 470 aaKnown RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 WSB2Q9NYS7 404 aaPredicted RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 ZNF212Q9UDV6 495 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 OR12D3Q9UGF7 316 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 BZW2Q9Y6E2 419 aaKnown RBP14.22□□□□□ -0.13
CLN3-235ENST00000568497 TMEM131Q92545 1883 aa14.22□□□□□ -0.13
CLN3-235ENST00000568497 A0A1B0GVM2 712 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 TYW5A2RUC4 315 aaKnown RBP14.21□□□□□ -0.13
CLN3-235ENST00000568497 ANKRD62A6NC57 917 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 TCAF2A6NFQ2 919 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 DRGXA6NNA5 263 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 RNF103O00237 685 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 BNIP3LO60238 219 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 LRCH4O75427 683 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 METAP1P53582 386 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 TAS2R40P59535 323 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 LY6DQ14210 128 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 STARD3Q14849 445 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 TSR1Q2NL82 804 aaKnown RBP14.21□□□□□ -0.13
CLN3-235ENST00000568497 INAVAQ3KP66 663 aa14.21□□□□□ -0.13
CLN3-235ENST00000568497 MANEALQ5VSG8 457 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms