RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SERPINH1P50454 418 aaKnown RBP15.35■□□□□ 0.05
VPS39-210ENST00000568357 CLCN6P51797 869 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 SFSWAPQ12872 951 aaKnown RBP15.35■□□□□ 0.05
VPS39-210ENST00000568357 POLD3Q15054 466 aaPredicted RBP15.35■□□□□ 0.05
VPS39-210ENST00000568357 POM121L1PQ3SYA9 428 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 CCDC122Q5T0U0 273 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 ERMARDQ5T6L9 678 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 PSAPL1Q6NUJ1 521 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 RABEPKQ7Z6M1 372 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 DSG4Q86SJ6 1040 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 ZCCHC9Q8N567 271 aaKnown RBP15.35■□□□□ 0.05
VPS39-210ENST00000568357 CHST14Q8NCH0 376 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 PIP4K2CQ8TBX8 421 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 ARHGEF26Q96DR7 871 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 EPAS1Q99814 870 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 ORAI3Q9BRQ5 295 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 DHX35Q9H5Z1 703 aaKnown RBP15.35■□□□□ 0.05
VPS39-210ENST00000568357 TMEM9BQ9NQ34 198 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 FZD4Q9ULV1 537 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 AP4E1Q9UPM8 1137 aa15.35■□□□□ 0.05
VPS39-210ENST00000568357 A0A1B0GTW7 788 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 WASH4PA8MWX3 477 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 C10orf142B7Z368 130 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 ARHGAP33O14559 1287 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 ALOX15BO15296 676 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 BCAT2O15382 392 aaPredicted RBP15.34■□□□□ 0.05
VPS39-210ENST00000568357 KDELR3O43731 214 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 PRPSAP2O60256 369 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 LRCH4O75427 683 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 TCF4P15884 667 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 CHRNA3P32297 505 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 ADKP55263 362 aaKnown RBP15.34■□□□□ 0.05
VPS39-210ENST00000568357 CNTN1Q12860 1018 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 FOXC1Q12948 553 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 ASTE1Q2TB18 679 aaPredicted RBP15.34■□□□□ 0.05
VPS39-210ENST00000568357 FAM46CQ5VWP2 391 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 KIAA0895LQ68EN5 471 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 C22orf39Q6P5X5 142 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 NCEH1Q6PIU2 408 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 LEKR1Q6ZMV7 388 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 DPY19L3Q6ZPD9 716 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 OR2I1PQ8NGU4 316 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 OR14C36Q8NHC7 312 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 SNX19Q92543 992 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 FAM131CQ96AQ9 280 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 BTBD6Q96KE9 485 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 SNRNP25Q9BV90 132 aaKnown RBP15.34■□□□□ 0.05
VPS39-210ENST00000568357 KLC2Q9H0B6 622 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 EBF2Q9HAK2 575 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 SUSD2Q9UGT4 822 aa15.34■□□□□ 0.05
VPS39-210ENST00000568357 FCF1Q9Y324 198 aaKnown RBP15.34■□□□□ 0.05
VPS39-210ENST00000568357 TNRC6BQ9UPQ9 1833 aaKnown RBP15.33■□□□□ 0.05
VPS39-210ENST00000568357 NUP205Q92621 2012 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 SRRM3A6NNA2 597 aaPredicted RBP15.33■□□□□ 0.04
VPS39-210ENST00000568357 TOP3BO95985 862 aaKnown RBP15.33■□□□□ 0.04
VPS39-210ENST00000568357 IL1R2P27930 398 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 ETFBP38117 255 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 DNA2P51530 1060 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 ADPRHP54922 357 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 TPI1P60174 286 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 TRIM14Q14142 442 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 UAP1L1Q3KQV9 507 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 ARSIQ5FYB1 569 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 UMODL1-AS1Q8N2C9 162 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 TMIEQ8NEW7 156 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 OR2T34Q8NGX1 318 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 HMCESQ96FZ2 354 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 KCTD15Q96SI1 283 aaPredicted RBP15.33■□□□□ 0.04
VPS39-210ENST00000568357 CHP1Q99653 195 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 NUP85Q9BW27 656 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 GTPBP2Q9BX10 602 aaKnown RBP15.33■□□□□ 0.04
VPS39-210ENST00000568357 CEP44Q9C0F1 390 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 CATSPERBQ9H7T0 1116 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 LHX6Q9UPM6 363 aa15.33■□□□□ 0.04
VPS39-210ENST00000568357 CXorf51AA0A1B0GTR3 108 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 LRRC72A6NJI9 287 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 RASA4BC9J798 803 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 C1QTNF3-AMACRE9PGA6 284 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 EEF2KO00418 725 aaKnown RBP15.32■□□□□ 0.04
VPS39-210ENST00000568357 GIPC1O14908 333 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 RASA4O43374 803 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 CD27P26842 260 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 PCK1P35558 622 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 CSNK1EP49674 416 aaKnown RBP15.32■□□□□ 0.04
VPS39-210ENST00000568357 YBEYP58557 167 aaPredicted RBP15.32■□□□□ 0.04
VPS39-210ENST00000568357 BNC1Q01954 994 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
VPS39-210ENST00000568357 CARD16Q5EG05 197 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 KCNT1Q5JUK3 1230 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 AGBL4Q5VU57 503 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 SARM1Q6SZW1 724 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 PCDH20Q8N6Y1 951 aaKnown RBP15.32■□□□□ 0.04
VPS39-210ENST00000568357 NETO2Q8NC67 525 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 ARRDC3Q96B67 414 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 CCDC114Q96M63 670 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 PACSIN1Q9BY11 444 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 RBSNQ9H1K0 784 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 ABHD10Q9NUJ1 306 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 HPCAL4Q9UM19 191 aa15.32■□□□□ 0.04
VPS39-210ENST00000568357 WASF3Q9UPY6 502 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms