RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLN3-230ENST00000568076 ATXN3LQ9H3M9 355 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 TLE6Q9H808 572 aa20.6■□□□□ 0.89
CLN3-230ENST00000568076 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLN3-230ENST00000568076 NT5C1B-RDH14C9J2C7 533 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 TIMM44O43615 452 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 SERPINE1P05121 402 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 RHOQP17081 205 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 ARNTP27540 789 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 SLC1A6P48664 564 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 TAF10Q12962 218 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 GRM3Q14832 879 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 KRT72Q14CN4 511 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 FAM91A1Q658Y4 838 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 RNF19BQ6ZMZ0 732 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 MIB1Q86YT6 1006 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 TNS4Q8IZW8 715 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 HMCESQ96FZ2 354 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 NSL1Q96IY1 281 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 EBF4Q9BQW3 602 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 FNIP2Q9P278 1114 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 IGLV3-10A0A075B6K4 115 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 J3KR12 359 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 TBC1D4O60343 1298 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 HNRNPCL1O60812 293 aaKnown RBP20.59■□□□□ 0.89
CLN3-230ENST00000568076 ALDH2P05091 517 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 MPOP05164 745 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 C2P06681 752 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 HAPLN1P10915 354 aaPredicted RBP20.59■□□□□ 0.89
CLN3-230ENST00000568076 CPB1P15086 417 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 GABRB3P28472 473 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 CCDC153Q494R4 210 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 RTP2Q5QGT7 225 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 ESRP1Q6NXG1 681 aaKnown RBP20.59■□□□□ 0.89
CLN3-230ENST00000568076 RANBP10Q6VN20 620 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 KDELC2Q7Z4H8 507 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 ZC3HC1Q86WB0 502 aaKnown RBP20.59■□□□□ 0.89
CLN3-230ENST00000568076 TMEM173Q86WV6 379 aaPredicted RBP20.59■□□□□ 0.89
CLN3-230ENST00000568076 FAM126BQ8IXS8 530 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 REM2Q8IYK8 340 aaPredicted RBP20.59■□□□□ 0.89
CLN3-230ENST00000568076 FAM13CQ8NE31 585 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 OR6Y1Q8NGX8 325 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 IGSF8Q969P0 613 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 SORT1Q99523 831 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 ZYG11BQ9C0D3 744 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 WWP1Q9H0M0 922 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 TMEM248Q9NWD8 314 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 CLIC5Q9NZA1 410 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 PPARGC1AQ9UBK2 798 aaKnown RBP20.59■□□□□ 0.89
CLN3-230ENST00000568076 DNAJC16Q9Y2G8 782 aa20.59■□□□□ 0.89
CLN3-230ENST00000568076 MYLKQ15746 1914 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 CPA3P15088 417 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 CHRNA4P43681 627 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 ARCN1P48444 511 aaKnown RBP20.58■□□□□ 0.89
CLN3-230ENST00000568076 NDST2P52849 883 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 PGGT1BP53609 377 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 GPR17Q13304 367 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 TRIP4Q15650 581 aaPredicted RBP20.58■□□□□ 0.89
CLN3-230ENST00000568076 MGAT5BQ3V5L5 792 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 FBXL22Q6P050 247 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 FUT10Q6P4F1 479 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 TAS1R1Q7RTX1 841 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 CCDC117Q8IWD4 279 aaPredicted RBP20.58■□□□□ 0.89
CLN3-230ENST00000568076 GPR22Q99680 433 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 SEPT5Q99719 369 aaPredicted RBP20.58■□□□□ 0.89
CLN3-230ENST00000568076 TUBB6Q9BUF5 446 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 ENTPD7Q9NQZ7 604 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 SLC2A6Q9UGQ3 507 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 TCAF1Q9Y4C2 921 aa20.58■□□□□ 0.89
CLN3-230ENST00000568076 CAPN14A8MX76 684 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 SLC8A1P32418 973 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 E2F5Q15329 346 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 ANO4Q32M45 955 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 RAP1GAP2Q684P5 730 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 KDELC1Q6UW63 502 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 CNTN4Q8IWV2 1026 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 CRIPAKQ8N1N5 446 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 PIWIL2Q8TC59 973 aaKnown RBP20.57■□□□□ 0.88
CLN3-230ENST00000568076 KLHL5Q96PQ7 755 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 FSD1LQ9BXM9 530 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 MARCH2Q9P0N8 246 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 SLC39A10Q9ULF5 831 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 L3MBTL1Q9Y468 752 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 G3V2L1 256 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 RTN3O95197 1032 aaPredicted RBP20.57■□□□□ 0.88
CLN3-230ENST00000568076 VAPBO95292 243 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 AHSGP02765 367 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 HMBSP08397 361 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 RALBP11234 206 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 ITGA9Q13797 1035 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 HNRNPDQ14103 355 aaKnown RBP20.57■□□□□ 0.88
CLN3-230ENST00000568076 POTEHQ6S545 545 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 TREML1Q86YW5 311 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 DENND6AQ8IWF6 608 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 ATP6V0D2Q8N8Y2 350 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 PPHLN1Q8NEY8 458 aaKnown RBP20.57■□□□□ 0.88
CLN3-230ENST00000568076 BCL7CQ8WUZ0 217 aaPredicted RBP20.57■□□□□ 0.88
CLN3-230ENST00000568076 BTN2A3PQ96KV6 586 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 CADM1Q9BY67 442 aaKnown RBP20.57■□□□□ 0.88
CLN3-230ENST00000568076 RHOJQ9H4E5 214 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms