RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 WASH3PC4AMC7 463 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 RAMP2O60895 175 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 ADAM23O75077 832 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 HOXD12P35452 270 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 CTSOP43234 321 aaPredicted RBP17.64■□□□□ 0.41
CLN3-217ENST00000565354 HADHBP55084 474 aaKnown RBP17.64■□□□□ 0.41
CLN3-217ENST00000565354 DPYSL2Q16555 572 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 IFI16Q16666 785 aaKnown RBP17.64■□□□□ 0.41
CLN3-217ENST00000565354 PEAR1Q5VY43 1037 aaPredicted RBP17.64■□□□□ 0.41
CLN3-217ENST00000565354 LYSMD4Q5XG99 296 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 TXNRD3NBQ6F5E7 133 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 NLRP14Q86W24 1093 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 CPNE8Q86YQ8 564 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 FRMD1Q8N878 549 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 KCTD6Q8NC69 237 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 OR7D4Q8NG98 312 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 OR52K2Q8NGK3 314 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 GABRG3Q99928 467 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 SUN2Q9UH99 717 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 PILRBQ9UKJ0 227 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 HPCAL4Q9UM19 191 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 DOCK4Q8N1I0 1966 aa17.64■□□□□ 0.41
CLN3-217ENST00000565354 PCDH15Q96QU1 1955 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 A0A0D9SEW6 157 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 CBX4O00257 560 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 CAPNS1P04632 268 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 CFIP05156 583 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 CHRM1P11229 460 aaPredicted RBP17.63■□□□□ 0.41
CLN3-217ENST00000565354 HLA-EP13747 358 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 PRKCHP24723 683 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 TAS2R40P59535 323 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 BYSLQ13895 437 aaKnown RBP17.63■□□□□ 0.41
CLN3-217ENST00000565354 POLD3Q15054 466 aaPredicted RBP17.63■□□□□ 0.41
CLN3-217ENST00000565354 MAP7D1Q3KQU3 841 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 ACCSLQ4AC99 568 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 DAAM2Q86T65 1068 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 MAP7D3Q8IWC1 876 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 DCAF4L2Q8NA75 395 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 HMGB4Q8WW32 186 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 RPL10LQ96L21 214 aaKnown RBP17.63■□□□□ 0.41
CLN3-217ENST00000565354 CALN1Q9BXU9 219 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 MAGEH1Q9H213 219 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 PCDH18Q9HCL0 1135 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 NDFIP2Q9NV92 336 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 KLHL11Q9NVR0 708 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 CWC15Q9P013 229 aaKnown RBP17.63■□□□□ 0.41
CLN3-217ENST00000565354 NEU3Q9UQ49 428 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 HYOU1Q9Y4L1 999 aa17.63■□□□□ 0.41
CLN3-217ENST00000565354 ATXN2Q99700 1313 aaKnown RBP17.63■□□□□ 0.41
CLN3-217ENST00000565354 RCCD1A6NED2 376 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 BTNL10A8MVZ5 291 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 WASH4PA8MWX3 477 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 PJA2O43164 708 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 BUB1BO60566 1050 aaPredicted RBP17.62■□□□□ 0.41
CLN3-217ENST00000565354 ERCC2P18074 760 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 COMTP21964 271 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 ITPKAP23677 461 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 HCAR3P49019 387 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 STK19P49842 368 aaPredicted RBP17.62■□□□□ 0.41
CLN3-217ENST00000565354 ATXN3P54252 364 aaPredicted RBP17.62■□□□□ 0.41
CLN3-217ENST00000565354 PDK2Q15119 407 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 PTPRNQ16849 979 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 RETSATQ6NUM9 610 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 POLNQ7Z5Q5 900 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 PROSER1Q86XN7 944 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 RHOT1Q8IXI2 618 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 HDDC3Q8N4P3 179 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 CHCHD4Q8N4Q1 142 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 ZNF366Q8N895 744 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 ALG14Q96F25 216 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 TSGA10Q9BZW7 698 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 ZNF212Q9UDV6 495 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 VPS51Q9UID3 782 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 SLC6A14Q9UN76 642 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 OR51B4Q9Y5P0 310 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 APC2O95996 2303 aa17.62■□□□□ 0.41
CLN3-217ENST00000565354 MACROD2A1Z1Q3 448 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 SNAP91O60641 907 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 KRT1P04264 644 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 ACVRL1P37023 503 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 YBEYP58557 167 aaPredicted RBP17.61■□□□□ 0.41
CLN3-217ENST00000565354 DUOXA1Q1HG43 343 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 ATP13A4Q4VNC1 1196 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 ARTNQ5T4W7 220 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 C11orf63Q6NUN7 778 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 ATP11CQ8NB49 1132 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 KDM1BQ8NB78 822 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 TPCN2Q8NHX9 752 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 CEP76Q8TAP6 659 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 ARHGEF2Q92974 986 aaKnown RBP17.61■□□□□ 0.41
CLN3-217ENST00000565354 CSPG4P5Q96PW8 444 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 PSMB7Q99436 277 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 GTPBP2Q9BX10 602 aaKnown RBP17.61■□□□□ 0.41
CLN3-217ENST00000565354 LACRTQ9GZZ8 138 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 DDX56Q9NY93 547 aaKnown RBP17.61■□□□□ 0.41
CLN3-217ENST00000565354 RCOR3Q9P2K3 495 aaPredicted RBP17.61■□□□□ 0.41
CLN3-217ENST00000565354 ADGRG1Q9Y653 693 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 ALG6Q9Y672 507 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 DUSP10Q9Y6W6 482 aa17.61■□□□□ 0.41
CLN3-217ENST00000565354 EDDM13A0A1B0GTR0 161 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms