RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ZNF354CQ86Y25 554 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 CCDC50Q8IVM0 306 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 RCOR2Q8IZ40 523 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 SYCE1Q8N0S2 351 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 STK40Q8N2I9 435 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 PGBD5Q8N414 524 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 ATP11CQ8NB49 1132 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 OR6K2Q8NGY2 324 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 HMGB4Q8WW32 186 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 NELL1Q92832 810 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 EXOC2Q96KP1 924 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 CALR3Q96L12 384 aaKnown RBP9.98□□□□□ -0.81
CLK3-208ENST00000562626 OLFM3Q96PB7 478 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 FAM129BQ96TA1 746 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 C10orf88Q9H8K7 445 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 EBF1Q9UH73 591 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 SLC25A13Q9UJS0 675 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 SARDHQ9UL12 918 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 PLA2G4CQ9UP65 541 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 INVSQ9Y283 1065 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 HEY1Q9Y5J3 304 aa9.98□□□□□ -0.81
CLK3-208ENST00000562626 DMDP11532 3685 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 ARHGAP42A6NI28 874 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 H0Y858 1186 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 PLK4O00444 970 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 APOL1O14791 398 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 INSIG1O15503 277 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 LAMTOR5O43504 91 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 BNIP3LO60238 219 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 ATG13O75143 517 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 TMCC1O94876 653 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 ATP1A1P05023 1023 aaKnown RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 SP9P0CG40 484 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 ETFBP38117 255 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 GARSP41250 739 aaKnown RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 CCR3P51677 355 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 NRLP54845 237 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 RWDD2BP57060 319 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 SULT2A1Q06520 285 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 PPP2R5EQ16537 467 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 KCTD19Q17RG1 926 aaPredicted RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 ACCSLQ4AC99 568 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 HSF5Q4G112 596 aaPredicted RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 TFDP3Q5H9I0 405 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 ZNF569Q5MCW4 686 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 TRMT11Q7Z4G4 463 aaKnown RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 MAP7D3Q8IWC1 876 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 FAM160A2Q8N612 972 aaPredicted RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 LZTR1Q8N653 840 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 TSTD1Q8NFU3 115 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 OR2A12Q8NGT7 310 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 RLN3Q8WXF3 142 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 RBM41Q96IZ5 413 aaKnown RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 MRGPRX1Q96LB2 322 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 WDR24Q96S15 920 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 LGMNQ99538 433 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 IER2Q9BTL4 223 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 OSBPL8Q9BZF1 889 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 TM6SF2Q9BZW4 377 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 SERGEFQ9UGK8 458 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 IPO11Q9UI26 975 aaKnown RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 SLC8A2Q9UPR5 921 aa9.97□□□□□ -0.81
CLK3-208ENST00000562626 R3HDM2Q9Y2K5 976 aaKnown RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 ZNF106Q9H2Y7 1883 aaKnown RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 TDRD6O60522 2096 aaKnown RBP9.97□□□□□ -0.81
CLK3-208ENST00000562626 LRP4O75096 1905 aa9.96□□□□□ -0.81
CLK3-208ENST00000562626 PLXNB3Q9ULL4 1909 aa9.96□□□□□ -0.81
CLK3-208ENST00000562626 EDDM13A0A1B0GTR0 161 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 MIF4GDA9UHW6 222 aaKnown RBP9.96□□□□□ -0.82
CLK3-208ENST00000562626 ZSCAN12O43309 604 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 APBB3O95704 486 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 CXCR5P32302 372 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 PTPN7P35236 360 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 SERPINB6P35237 376 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 DGKEP52429 567 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 ST8SIA6P61647 398 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 RPS14P62263 151 aaKnown RBP9.96□□□□□ -0.82
CLK3-208ENST00000562626 IL10RBQ08334 325 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 KLF1Q13351 362 aaPredicted RBP9.96□□□□□ -0.82
CLK3-208ENST00000562626 SIX1Q15475 284 aaPredicted RBP9.96□□□□□ -0.82
CLK3-208ENST00000562626 POM121L1PQ3SYA9 428 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 RETSATQ6NUM9 610 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 DPY19L3Q6ZPD9 716 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 BBS12Q6ZW61 710 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 ERMP1Q7Z2K6 904 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 TMPRSS6Q8IU80 811 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 ATPAF2Q8N5M1 289 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 KDM1BQ8NB78 822 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 TSEN2Q8NCE0 465 aaKnown RBP9.96□□□□□ -0.82
CLK3-208ENST00000562626 OR2T3Q8NH03 318 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 ACTL9Q8TC94 416 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 PHOX2BQ99453 314 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 CEP41Q9BYV8 373 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 RSPH9Q9H1X1 276 aaPredicted RBP9.96□□□□□ -0.82
CLK3-208ENST00000562626 SP110Q9HB58 689 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 FAM86C1Q9NVL1 165 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 SMARCAL1Q9NZC9 954 aa9.96□□□□□ -0.82
CLK3-208ENST00000562626 UBA2Q9UBT2 640 aaPredicted RBP9.96□□□□□ -0.82
CLK3-208ENST00000562626 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.96□□□□□ -0.82
CLK3-208ENST00000562626 WASF2Q9Y6W5 498 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms