RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PCED1AQ9H1Q7 454 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 PABPC3Q9H361 631 aaKnown RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 SP110Q9HB58 689 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 KLHL11Q9NVR0 708 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 UBA2Q9UBT2 640 aaPredicted RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 DUSP10Q9Y6W6 482 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 PLXND1Q9Y4D7 1925 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 IGHV1OR15-9A0A0B4J2B8 117 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 MACROD2A1Z1Q3 448 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 C3orf70A6NLC5 250 aaPredicted RBP13.24□□□□□ -0.29
NEDD8-208ENST00000560427 DFFAO00273 331 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 TMCC1O94876 653 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 PRNPP04156 253 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 VAV1P15498 845 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 MX2P20592 715 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 CTNNA2P26232 953 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 CD6P30203 668 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 CTNNA1P35221 906 aaKnown RBP13.24□□□□□ -0.29
NEDD8-208ENST00000560427 DPP6P42658 865 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 TPMTP51580 245 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 CCDC15Q0P6D6 951 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 MMRN1Q13201 1228 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 SRSF5Q13243 272 aaKnown RBP13.24□□□□□ -0.29
NEDD8-208ENST00000560427 CST6Q15828 149 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 TAZQ16635 292 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 PMS2CLQ68D20 193 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 SLC9A4Q6AI14 798 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 PRR23BQ6ZRT6 265 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 STK40Q8N2I9 435 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 ATPAF2Q8N5M1 289 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 SUMF1Q8NBK3 374 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 TMIEQ8NEW7 156 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 OR2AP1Q8NGE2 309 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 EXD1Q8NHP7 514 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.24□□□□□ -0.29
NEDD8-208ENST00000560427 GDAP1L1Q96MZ0 367 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 FAM129BQ96TA1 746 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 MAK16Q9BXY0 300 aaKnown RBP13.24□□□□□ -0.29
NEDD8-208ENST00000560427 SLC6A17Q9H1V8 727 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 MTG2Q9H4K7 406 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 ETNK2Q9NVF9 386 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 IPO11Q9UI26 975 aaKnown RBP13.24□□□□□ -0.29
NEDD8-208ENST00000560427 PPM1HQ9ULR3 514 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 FZD4Q9ULV1 537 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 NCKAP1Q9Y2A7 1128 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 FCF1Q9Y324 198 aaKnown RBP13.24□□□□□ -0.29
NEDD8-208ENST00000560427 HYOU1Q9Y4L1 999 aa13.24□□□□□ -0.29
NEDD8-208ENST00000560427 NYNRINQ9P2P1 1898 aaKnown RBP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 GRID2IPA4D2P6 1211 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 MIF4GDA9UHW6 222 aaKnown RBP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 SLC7A4O43246 635 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 MFSD11O43934 449 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 ZNF821O75541 412 aaPredicted RBP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 ZRANB2O95218 330 aaKnown RBP eCLIP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 IGSF6O95976 241 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 IL1BP01584 269 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 CHRNA3P32297 505 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 SLC8A1P32418 973 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 HSPA9P38646 679 aaKnown RBP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 MAPK8P45983 427 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 COPS2P61201 443 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 RHOAP61586 193 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 GALNT2Q10471 571 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 TFDP2Q14188 446 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 PLK5Q496M5 336 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 CARD16Q5EG05 197 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 TFDP3Q5H9I0 405 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 TIGD7Q6NT04 549 aaPredicted RBP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 LPCAT2Q7L5N7 544 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 MMAAQ8IVH4 418 aaKnown RBP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 RCOR2Q8IZ40 523 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 PQLC3Q8N755 202 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 CADM4Q8NFZ8 388 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 RLN3Q8WXF3 142 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 FATE1Q969F0 183 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 FAM131CQ96AQ9 280 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 PPP1R16AQ96I34 528 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 ZNF830Q96NB3 372 aaPredicted RBP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 OSBPL1AQ9BXW6 950 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 GOLPH3Q9H4A6 298 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 SGK2Q9HBY8 427 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 HAUS2Q9NVX0 235 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 IL36AQ9UHA7 158 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 GMEB2Q9UKD1 530 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 TPX2Q9ULW0 747 aaKnown RBP13.23□□□□□ -0.29
NEDD8-208ENST00000560427 CYP8B1Q9UNU6 501 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 PCDHGA5Q9Y5G8 931 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 PCDHA3Q9Y5H8 950 aa13.23□□□□□ -0.29
NEDD8-208ENST00000560427 PRR23AA6NEV1 266 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 APOL1O14791 398 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 MAP3K13O43283 966 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 PTMAP06454 111 aaKnown RBP13.22□□□□□ -0.29
NEDD8-208ENST00000560427 RETP07949 1114 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 TNNT1P13805 278 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 PTPN7P35236 360 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 GARSP41250 739 aaKnown RBP13.22□□□□□ -0.29
NEDD8-208ENST00000560427 CDKN2BP42772 138 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 PSMD8P48556 350 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 RENBPP51606 427 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 CCNHP51946 323 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms