RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 LZTS1Q9Y250 596 aa4.82□□□□□ -1.64
VPS13C-208ENST00000559119 KDM4EB2RXH2 506 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-208ENST00000559119 BMPR1BO00238 502 aa4.81□□□□□ -1.64
VPS13C-208ENST00000559119 CLDN7O95471 211 aa4.81□□□□□ -1.64
VPS13C-208ENST00000559119 GXYLT1Q4G148 440 aa4.81□□□□□ -1.64
VPS13C-208ENST00000559119 WDR5BQ86VZ2 330 aa4.81□□□□□ -1.64
VPS13C-208ENST00000559119 SYTL1Q8IYJ3 562 aa4.81□□□□□ -1.64
VPS13C-208ENST00000559119 TEX45Q8NA69 505 aa4.81□□□□□ -1.64
VPS13C-208ENST00000559119 CADM1Q9BY67 442 aaKnown RBP4.81□□□□□ -1.64
VPS13C-208ENST00000559119 IGLV5-37A0A075B6J1 123 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 SAA2-SAA4A0A096LPE2 208 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 ANO9A1A5B4 782 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 PRR23AA6NEV1 266 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 DDTLA6NHG4 134 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-208ENST00000559119 AQP12BA6NM10 295 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 KIF1CO43896 1103 aaKnown RBP4.8□□□□□ -1.64
VPS13C-208ENST00000559119 CCNT1O60563 726 aaKnown RBP4.8□□□□□ -1.64
VPS13C-208ENST00000559119 HEXIM1O94992 359 aaKnown RBP4.8□□□□□ -1.64
VPS13C-208ENST00000559119 PEX5P50542 639 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 AK2P54819 239 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 DDR1Q08345 913 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 SNTA1Q13424 505 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 MYBPC2Q14324 1141 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 CCDC181Q5TID7 509 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 EXOC3L1Q86VI1 746 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 NEXN-AS1Q8NBZ9 246 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 WBP2Q969T9 261 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 TMEM18Q96B42 140 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 PIGSQ96S52 555 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 LHPPQ9H008 270 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 SDF2L1Q9HCN8 221 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 MALT1Q9UDY8 824 aa4.8□□□□□ -1.64
VPS13C-208ENST00000559119 A0A0A0MQY5 61 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 NPIPB13A6NJU9 1138 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 NPIPB5A8MRT5 1133 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 NPIPB4C9JG80 1138 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 DDAH2O95865 285 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 NBPF7P0C2Y1 421 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-208ENST00000559119 ABCB4P21439 1286 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 MXI1P50539 228 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 RPS6KA2Q15349 733 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 TYW3Q6IPR3 259 aaKnown RBP4.79□□□□□ -1.64
VPS13C-208ENST00000559119 MEX3BQ6ZN04 569 aaKnown RBP4.79□□□□□ -1.64
VPS13C-208ENST00000559119 PATL1Q86TB9 770 aaKnown RBP4.79□□□□□ -1.64
VPS13C-208ENST00000559119 SCN4BQ8IWT1 228 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 POC1AQ8NBT0 407 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 C2CD4CQ8TF44 421 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 STYXQ8WUJ0 223 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 ARRDC3Q96B67 414 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 IL17FQ96PD4 163 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 METTL14Q9HCE5 456 aaKnown RBP4.79□□□□□ -1.64
VPS13C-208ENST00000559119 SEPSECSQ9HD40 501 aaKnown RBP4.79□□□□□ -1.64
VPS13C-208ENST00000559119 BAG5Q9UL15 447 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 OSGIN2Q9Y236 505 aa4.79□□□□□ -1.64
VPS13C-208ENST00000559119 A0A1B0GVM2 712 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 SYN3O14994 580 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 CKMT1AP12532 417 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 CDK7P50613 346 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 MYBPHQ13203 477 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 CTTNQ14247 550 aaKnown RBP4.78□□□□□ -1.64
VPS13C-208ENST00000559119 STARD3Q14849 445 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 NCAPH2Q6IBW4 605 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 AADACL2Q6P093 401 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 NFRKBQ6P4R8 1299 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 KSR2Q6VAB6 950 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 LMNTD1Q8N9Z9 388 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 SLC2A12Q8TD20 617 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 TEFMQ96QE5 360 aaKnown RBP4.78□□□□□ -1.64
VPS13C-208ENST00000559119 RTKNQ9BST9 563 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 GAREM1Q9H706 876 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 SLC22A11Q9NSA0 550 aa4.78□□□□□ -1.64
VPS13C-208ENST00000559119 CLGNO14967 610 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 HNRNPRO43390 633 aaKnown RBP4.77□□□□□ -1.65
VPS13C-208ENST00000559119 LMX1BO60663 402 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 SKIV2L2P42285 1042 aaKnown RBP4.77□□□□□ -1.65
VPS13C-208ENST00000559119 DPP6P42658 865 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 SPARCL1Q14515 664 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 KIF26BQ2KJY2 2108 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 RINLQ6ZS11 566 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 RAB11FIP2Q7L804 512 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 GALNT7Q86SF2 657 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 TRIM74Q86UV6 250 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 TRIM73Q86UV7 250 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 TMC8Q8IU68 726 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 RBFAQ8N0V3 343 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 FAM71BQ8TC56 605 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 CPT1BQ92523 772 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 BICD1Q96G01 975 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 MYD88Q99836 296 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 ELAC1Q9H777 363 aaKnown RBP4.77□□□□□ -1.65
VPS13C-208ENST00000559119 ACAD9Q9H845 621 aa4.77□□□□□ -1.65
VPS13C-208ENST00000559119 A0A0U1RQJ8 604 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 MAGEA13PA6NCF6 341 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 TNFRSF6BO95407 300 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 CYP4B1P13584 511 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 GYS1P13807 737 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 AMD1P17707 334 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 TECP42680 631 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 RPS6KA3P51812 740 aa4.76□□□□□ -1.65
VPS13C-208ENST00000559119 ILF3Q12906 894 aaKnown RBP eCLIP4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms