RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TMEM175Q9BSA9 504 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PI4K2AQ9BTU6 479 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PLVAPQ9BX97 442 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 CD244Q9BZW8 370 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 GPR88Q9GZN0 384 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 XYLT2Q9H1B5 865 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 ISCUQ9H1K1 167 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 SEMA4AQ9H3S1 761 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PRDM12Q9H4Q4 367 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 APOBEC3GQ9HC16 384 aaKnown RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 CD320Q9NPF0 282 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 LZTFL1Q9NQ48 299 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 RIC8BQ9NVN3 520 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 ERVK13-1Q9NX77 482 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 GMPR2Q9P2T1 348 aaKnown RBP5.34□□□□□ -1.55
LDLR-209ENST00000558528 UVRAGQ9P2Y5 699 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 HESX1Q9UBX0 185 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 PRSS50Q9UI38 385 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 TMPRSS11EQ9UL52 423 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 GUCA1BQ9UMX6 200 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 JRKLQ9Y4A0 524 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 SNX9Q9Y5X1 595 aa5.34□□□□□ -1.55
LDLR-209ENST00000558528 FAM186AA6NE01 2351 aa5.34□□□□□ -1.56
LDLR-209ENST00000558528 USP24Q9UPU5 2620 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 ZNFX1Q9P2E3 1918 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 A0A087X0T9 212 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 A0A1W2PRQ8 180 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 TMEM189-UBE2V1I3L0A0 370 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 PODXLO00592 558 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 CYB561D2O14569 222 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 KIAA0355O15063 1070 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 TIMP1P01033 207 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 AMHP03971 560 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 CYP1A1P04798 512 aaPredicted RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 WEE2P0C1S8 567 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 FAM228BP0C875 321 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 ODC1P11926 461 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 BRAFP15056 766 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 CD19P15391 556 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 GLB1P16278 677 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 TYMPP19971 482 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 ACO1P21399 889 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 WARSP23381 471 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 MAP4P27816 1152 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 SLC1A1P43005 524 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 ACADSBP45954 432 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 ZNF132P52740 706 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 TERF1P54274 439 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 GALCP54803 685 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 HADHBP55084 474 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 LILRA4P59901 499 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 CYP27A1Q02318 531 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 RNASELQ05823 741 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 MGAT2Q10469 447 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 PPIGQ13427 754 aaKnown RBP eCLIP5.33□□□□□ -1.562e-15■□□□□ 10.1
LDLR-209ENST00000558528 EFR3AQ14156 821 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 MTF1Q14872 753 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 NR0B2Q15466 257 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 GAB4Q2WGN9 574 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 C3orf36Q3SXR2 165 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 TRIM60Q495X7 471 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 PRRT3Q5FWE3 981 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 ZNF569Q5MCW4 686 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 STEAP3Q658P3 488 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 SPOPLQ6IQ16 392 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 MFSD5Q6N075 450 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 BEND5Q7L4P6 421 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 KANSL1Q7Z3B3 1105 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 SLC47A2Q86VL8 602 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 PHF13Q86YI8 300 aaPredicted RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 ZDHHC17Q8IUH5 632 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 CRYBG2Q8N1P7 616 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 AGGF1Q8N302 714 aaeCLIP5.33□□□□□ -1.56
LDLR-209ENST00000558528 RNF169Q8NCN4 708 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 C3orf20Q8ND61 904 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 RIN2Q8WYP3 895 aaPredicted RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 BADQ92934 168 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 ZNF566Q969W8 418 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 C18orf25Q96B23 403 aaPredicted RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 RPGRIP1Q96KN7 1286 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 MYRFLQ96LU7 910 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 C16orf45Q96MC5 204 aaPredicted RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 ZMAT2Q96NC0 199 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 NAPGQ99747 312 aaPredicted RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 DESI2Q9BSY9 194 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 UBXN6Q9BZV1 441 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 MAGEH1Q9H213 219 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 MTIF3Q9H2K0 278 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 ZMAT3Q9HA38 289 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 ALG13Q9NP73 1137 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 TM7SF3Q9NS93 570 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 PARVAQ9NVD7 372 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 TNFRSF10DQ9UBN6 386 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 DNAI1Q9UI46 699 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 DUSP13Q9UII6 198 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 SIX4Q9UIU6 781 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 NOCTQ9UK39 431 aaKnown RBP5.33□□□□□ -1.56
LDLR-209ENST00000558528 GTF3C4Q9UKN8 822 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms