RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 L3MBTL1Q9Y468 752 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 ASB3Q9Y575 518 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 SNX10Q9Y5X0 201 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 USH1CQ9Y6N9 552 aa12.88□□□□□ -0.35
SHMT2-229ENST00000557348 SCN5AQ14524 2016 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 FAM237BA0A1B0GVD1 139 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 TYROBPO43914 113 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 LATS1O95835 1130 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 KRT4P19013 534 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 CD68P34810 354 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-229ENST00000557348 KCNJ2P63252 427 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 MPP3Q13368 585 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 PABPC1LQ4VXU2 614 aaKnown RBP12.87□□□□□ -0.35
SHMT2-229ENST00000557348 TMCO4Q5TGY1 634 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 CHSY1Q86X52 802 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 ZSCAN18Q8TBC5 510 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-229ENST00000557348 GPR152Q8TDT2 470 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 GIPC2Q8TF65 315 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 MZB1Q8WU39 189 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 LRRN4Q8WUT4 740 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 RPRD1AQ96P16 312 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-229ENST00000557348 YME1L1Q96TA2 773 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 VN1R3Q9BXE9 311 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 TLE6Q9H808 572 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 CYP4F11Q9HBI6 524 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 GLOD4Q9HC38 313 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 IL23AQ9NPF7 189 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 VPS45Q9NRW7 570 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 IPO11Q9UI26 975 aaKnown RBP12.87□□□□□ -0.35
SHMT2-229ENST00000557348 NUDT5Q9UKK9 219 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 YIPF1Q9Y548 306 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 TET1Q8NFU7 2136 aa12.87□□□□□ -0.35
SHMT2-229ENST00000557348 RAMP2O60895 175 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 SOAT2O75908 522 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 USP1O94782 785 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 C1QAP02745 245 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 KRT16P08779 473 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 CSF2RAP15509 400 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 MGAT1P26572 445 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 EPHB3P54753 998 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 SESN2P58004 480 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 MGAT5Q09328 741 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ILF2Q12905 390 aaKnown RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 PPIGQ13427 754 aaKnown RBP eCLIP12.86□□□□□ -0.353e-8■□□□□ 10.3
SHMT2-229ENST00000557348 EFTUD2Q15029 972 aaKnown RBP eCLIP12.86□□□□□ -0.354e-8■■■■■ 44
SHMT2-229ENST00000557348 GSTA3Q16772 222 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 HHATQ5VTY9 493 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 TIFABQ6ZNK6 161 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 TP53INP2Q8IXH6 220 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 GABPB2Q8TAK5 448 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ACMSDQ8TDX5 336 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 DENND1AQ8TEH3 1009 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ARNTL2Q8WYA1 636 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ITFG2Q969R8 447 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 VWCEQ96DN2 955 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 APOPT1Q96IL0 206 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ZNF599Q96NL3 588 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 CEP41Q9BYV8 373 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 IQCGQ9H095 443 aaKnown RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.86□□□□□ -0.356e-6■■□□□ 12.1
SHMT2-229ENST00000557348 TXNDC16Q9P2K2 825 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 LNPEPQ9UIQ6 1025 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 COL4A6Q14031 1691 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ZNF840PA6NDX5 716 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ADAM12O43184 909 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ACSL4O60488 711 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ASMTLO95671 621 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 LINGO3P0C6S8 592 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 TACR2P21452 398 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ETFBP38117 255 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 RPS6KA3P51812 740 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 SLC18A2Q05940 514 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 IL10RBQ08334 325 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 MTM1Q13496 603 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 FBXL22Q6P050 247 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 POTEHQ6S545 545 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 C14orf80Q86SX3 495 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 TMEM135Q86UB9 458 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 BBS5Q8N3I7 341 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 SPDYE1Q8NFV5 336 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 MRRFQ96E11 262 aaKnown RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 TGS1Q96RS0 853 aaKnown RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 MAGEH1Q9H213 219 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 CCSER2Q9H7U1 834 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 SP110Q9HB58 689 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 MRM3Q9HC36 420 aaKnown RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 PRKAG2Q9UGJ0 569 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 LRCH1Q9Y2L9 728 aa12.86□□□□□ -0.35
SHMT2-229ENST00000557348 MRPL42Q9Y6G3 142 aaKnown RBP12.86□□□□□ -0.35
SHMT2-229ENST00000557348 ENO4A6NNW6 628 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 TCP11X1B4DZS4 312 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 C2CD2LO14523 706 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 PRRG1O14668 218 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 HMGA1P17096 107 aaKnown RBP12.85□□□□□ -0.35
SHMT2-229ENST00000557348 GRIA1P42261 906 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 CDH4P55283 916 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 DEFB103AP81534 67 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 OCRLQ01968 901 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 POLD3Q15054 466 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms