RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CST6Q15828 149 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 IFI16Q16666 785 aaKnown RBP13.85□□□□□ -0.19
SHMT2-228ENST00000557302 INO80DQ53TQ3 878 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-228ENST00000557302 ANKRD20A8PQ5CZ79 823 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 LEKR1Q6ZMV7 388 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 ASCL5Q7RTU5 278 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 LRRC8AQ8IWT6 810 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 ARHGAP12Q8IWW6 846 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 OR2A12Q8NGT7 310 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 RAPGEF5Q92565 580 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 ISG20Q96AZ6 181 aaKnown RBP13.85□□□□□ -0.19
SHMT2-228ENST00000557302 ZC3H10Q96K80 434 aaKnown RBP13.85□□□□□ -0.19
SHMT2-228ENST00000557302 TNKS2Q9H2K2 1166 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 PABPC3Q9H361 631 aaKnown RBP13.85□□□□□ -0.19
SHMT2-228ENST00000557302 GOLPH3Q9H4A6 298 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 DDX56Q9NY93 547 aaKnown RBP13.85□□□□□ -0.19
SHMT2-228ENST00000557302 UBA2Q9UBT2 640 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-228ENST00000557302 MBD1Q9UIS9 605 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-228ENST00000557302 GMEB2Q9UKD1 530 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 MFHAS1Q9Y4C4 1052 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 ACTL7AQ9Y615 435 aa13.85□□□□□ -0.19
SHMT2-228ENST00000557302 CHD5Q8TDI0 1954 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 C1QTNF3-AMACRE9PGA6 284 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 GFRA3O60609 400 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 PRAMEF11O60813 436 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 NDUFS2O75306 463 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 ZNF821O75541 412 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-228ENST00000557302 TMCC1O94876 653 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 IGLV3-19P01714 112 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 SLC8A1P32418 973 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 RPL6Q02878 288 aaKnown RBP13.84□□□□□ -0.19
SHMT2-228ENST00000557302 FAM46CQ5VWP2 391 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 PMS2CLQ68D20 193 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 LPCAT2Q7L5N7 544 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 FAM124AQ86V42 546 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 VSIG1Q86XK7 387 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 NETO2Q8NC67 525 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 PCDH19Q8TAB3 1148 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 GANCQ8TET4 914 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 FAF2Q96CS3 445 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 TOE1Q96GM8 510 aaKnown RBP13.84□□□□□ -0.19
SHMT2-228ENST00000557302 TM6SF2Q9BZW4 377 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 DUSP15Q9H1R2 295 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-228ENST00000557302 SP110Q9HB58 689 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 WSB2Q9NYS7 404 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-228ENST00000557302 NCDNQ9UBB6 729 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 NCKAP1Q9Y2A7 1128 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 ADGRG1Q9Y653 693 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 SDK1Q7Z5N4 2213 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 EP300Q09472 2414 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-228ENST00000557302 OTOGLQ3ZCN5 2332 aa13.84□□□□□ -0.19
SHMT2-228ENST00000557302 EML5Q05BV3 1969 aa13.83□□□□□ -0.19
SHMT2-228ENST00000557302 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 MACROD2A1Z1Q3 448 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 ZNF487B1APH4 448 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 J3KR12 359 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 MID1O15344 667 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 GSRP00390 522 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 PRNPP04156 253 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 RETP07949 1114 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 C5AR1P21730 350 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 CHRNA3P32297 505 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 DHPSP49366 369 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-228ENST00000557302 SNRPD1P62314 119 aaKnown RBP13.83□□□□□ -0.2
SHMT2-228ENST00000557302 CARD16Q5EG05 197 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 SPDYCQ5MJ68 293 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 NCBP2-AS2Q69YL0 99 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 DPY19L3Q6ZPD9 716 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 USP30Q70CQ3 517 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 TP53INP2Q8IXH6 220 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 PLPP6Q8IY26 295 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 TMEFF1Q8IYR6 380 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 RYBPQ8N488 228 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-228ENST00000557302 ATPAF2Q8N5M1 289 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 PIP4K2CQ8TBX8 421 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 KIAA1524Q8TCG1 905 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 RUBCNQ92622 972 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 LOXL4Q96JB6 756 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 HINFPQ9BQA5 517 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 TSGA10Q9BZW7 698 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 PDFQ9HBH1 243 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 FBXL12Q9NXK8 326 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 HECAQ9UBI9 543 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-228ENST00000557302 TRIM10Q9UDY6 481 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 IPO11Q9UI26 975 aaKnown RBP13.83□□□□□ -0.2
SHMT2-228ENST00000557302 PPM1HQ9ULR3 514 aa13.83□□□□□ -0.2
SHMT2-228ENST00000557302 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.83□□□□□ -0.2
SHMT2-228ENST00000557302 SPAG17Q6Q759 2223 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 A0A1W2PP55 124 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 C3orf70A6NLC5 250 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-228ENST00000557302 MFSD11O43934 449 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 RNASEH2AO75792 299 aaKnown RBP13.82□□□□□ -0.2
SHMT2-228ENST00000557302 CCNHP51946 323 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-228ENST00000557302 RHOAP61586 193 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 CCZ1BP86790 482 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 CCZ1P86791 482 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-228ENST00000557302 IL10RBQ08334 325 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 PAFAH1B3Q15102 231 aaKnown RBP13.82□□□□□ -0.2
SHMT2-228ENST00000557302 ARHGAP36Q6ZRI8 547 aa13.82□□□□□ -0.2
SHMT2-228ENST00000557302 KATNAL2Q8IYT4 538 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms