RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	MICU2	Q8IYU8	434 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	ACTRT2	Q8TDY3	377 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	UBASH3B	Q8TF42	649 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	RBBP8	Q99708	897 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	PKP2	Q99959	881 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	MUC3B	Q9H195	1237 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	RAD21L1	Q9H4I0	556 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	AAAS	Q9NRG9	546 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	RGS18	Q9NS28	235 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	PRMT7	Q9NVM4	692 aa	Predicted RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	STK39	Q9UEW8	545 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	TIMM13	Q9Y5L4	95 aa	Predicted RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	ARAP2	Q8WZ64	1704 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	RGS5	O15539	181 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	SOAT2	O75908	522 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CHRNG	P07510	517 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CTSH	P09668	335 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC2A3	P11169	496 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	YAP1	P46937	504 aa	Known RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CDH15	P55291	814 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	RAB10	P61026	200 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CDH17	Q12864	832 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	PTP4A2	Q12974	167 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CTBP1	Q13363	440 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	SIX1	Q15475	284 aa	Predicted RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CA9	Q16790	459 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLEC6A	Q6EIG7	209 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	PTF1A	Q7RTS3	328 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	EID3	Q8N140	333 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC2A14	Q8TDB8	520 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	ITFG2	Q969R8	447 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CPXM1	Q96SM3	734 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CINP	Q9BW66	212 aa	Predicted RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	TEX13B	Q9BXU2	312 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF556	Q9HAH1	456 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	PCDH18	Q9HCL0	1135 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	TMPRSS4	Q9NRS4	437 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAP3K20	Q9NYL2	800 aa	Known RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	TAS2R1	Q9NYW7	299 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	WWOX	Q9NZC7	414 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	TRMT6	Q9UJA5	497 aa	Known RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	PRPF19	Q9UMS4	504 aa	Known RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	SATB2	Q9UPW6	733 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	COQ6	Q9Y2Z9	468 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC30A1	Q9Y6M5	507 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAGEB16	A2A368	324 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	KLHL33	A6NCF5	533 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	NPEPPSL1	A6NEC2	478 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	TPD52L2	O43399	206 aa	Known RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	KCNH1	O95259	989 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CST3	P01034	146 aa	Predicted RBP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	RBP1	P09455	135 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CYP4F2	P78329	520 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	MPP1	Q00013	466 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CYP4F3	Q08477	520 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	FSTL1	Q12841	308 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CACHD1	Q5VU97	1274 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	BBS12	Q6ZW61	710 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	SAMD7	Q7Z3H4	446 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	TMEM130	Q8N3G9	435 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADCY4	Q8NFM4	1077 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAML3	Q96JK9	1138 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	QKI	Q96PU8	341 aa	Known RBP eCLIP	5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZC4H2	Q9NQZ6	224 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	COL20A1	Q9P218	1284 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	TJP2	Q9UDY2	1190 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	CIDEB	Q9UHD4	219 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005	DOLK	Q9UPQ8	538 aa		5.05	□□□□□ -1.6
SYNE2-223	ENST00000557005		G3V2T6	193 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLDN5	O00501	218 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	CNOT3	O75175	753 aa	Known RBP	5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	GLP2R	O95838	553 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCDC166	P0CW27	439 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAG	P20916	626 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	CHI3L1	P36222	383 aa	Predicted RBP	5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATXN1	P54253	815 aa	Known RBP	5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	PRKAA2	P54646	552 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	FRG1	Q14331	258 aa	Known RBP	5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	DDR2	Q16832	855 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	ARMCX6	Q7L4S7	300 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZCCHC7	Q8N3Z6	543 aa	Known RBP	5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	FBXO27	Q8NI29	283 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	TFAP2B	Q92481	460 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	BDH2	Q9BUT1	245 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	ELOVL4	Q9GZR5	314 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	DPEP3	Q9H4B8	488 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZFYVE28	Q9HCC9	887 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	ENTPD7	Q9NQZ7	604 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	TRMT13	Q9NUP7	481 aa	Known RBP	5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	TRIM24	O15164	1050 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	RAD51B	O15315	384 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAFG	O15525	162 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	DNAJA2	O60884	412 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	MYO1D	O94832	1006 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCNE2	O96020	404 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	LTA4H	P09960	611 aa	Known RBP	5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	ITGB5	P18084	799 aa		5.04	□□□□□ -1.6
SYNE2-223	ENST00000557005	CCNG1	P51959	295 aa		5.04	□□□□□ -1.6

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