RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SIPA1Q96FS4 1042 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 MAK16Q9BXY0 300 aaKnown RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 TM6SF2Q9BZW4 377 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 IRF2BPLQ9H1B7 796 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 RSPH9Q9H1X1 276 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 UBA2Q9UBT2 640 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 IPO11Q9UI26 975 aaKnown RBP17.82■□□□□ 0.44
SHMT2-225ENST00000556798 PCDHA3Q9Y5H8 950 aa17.82■□□□□ 0.44
SHMT2-225ENST00000556798 MYO15AQ9UKN7 3530 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 ZNF487B1APH4 448 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 APOL1O14791 398 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 HRO43593 1189 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 LILRB5O75023 590 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 ZRANB2O95218 330 aaKnown RBP eCLIP17.81■□□□□ 0.441e-7■□□□□ 9.4
SHMT2-225ENST00000556798 ELAVL3Q14576 367 aaKnown RBP17.81■□□□□ 0.44
SHMT2-225ENST00000556798 KAZNQ674X7 775 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 ZNF776Q68DI1 518 aaPredicted RBP17.81■□□□□ 0.44
SHMT2-225ENST00000556798 SLC9A4Q6AI14 798 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 VSIG1Q86XK7 387 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 CHST14Q8NCH0 376 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 OR2A12Q8NGT7 310 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 EXD1Q8NHP7 514 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 LRRN4Q8WUT4 740 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 OR8D1Q8WZ84 308 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 ALG3Q92685 438 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 FAM129BQ96TA1 746 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 CEP44Q9C0F1 390 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 FBRSQ9HAH7 460 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 CYP8B1Q9UNU6 501 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 SDK1Q7Z5N4 2213 aa17.81■□□□□ 0.44
SHMT2-225ENST00000556798 TNRC6BQ9UPQ9 1833 aaKnown RBP17.8■□□□□ 0.44
SHMT2-225ENST00000556798 CXorf51AA0A1B0GTR3 108 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 CCDC66A2RUB6 948 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 RPP40O75818 363 aaKnown RBP17.8■□□□□ 0.44
SHMT2-225ENST00000556798 BCKDHBP21953 392 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 NHLH1Q02575 133 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 IL10RBQ08334 325 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 GALNT2Q10471 571 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 SLC10A2Q12908 348 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-225ENST00000556798 TAZQ16635 292 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 MAP7D1Q3KQU3 841 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 POM121L1PQ3SYA9 428 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 USP39Q53GS9 565 aaKnown RBP17.8■□□□□ 0.44
SHMT2-225ENST00000556798 ATXN7L2Q5T6C5 722 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-225ENST00000556798 NPNTQ6UXI9 565 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 DPY19L3Q6ZPD9 716 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 RCOR2Q8IZ40 523 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 PCDH20Q8N6Y1 951 aaKnown RBP17.8■□□□□ 0.44
SHMT2-225ENST00000556798 OR6K2Q8NGY2 324 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 GAB3Q8WWW8 586 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 RBM41Q96IZ5 413 aaKnown RBP17.8■□□□□ 0.44
SHMT2-225ENST00000556798 EXOC2Q96KP1 924 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 PHOX2BQ99453 314 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 HEY1Q9Y5J3 304 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 USP34Q70CQ2 3546 aa17.8■□□□□ 0.44
SHMT2-225ENST00000556798 hCG_1818297A0A087WSY0 165 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 MID1O15344 667 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 DDX3YO15523 660 aaKnown RBP17.79■□□□□ 0.44
SHMT2-225ENST00000556798 RNASEH1O60930 286 aaKnown RBP17.79■□□□□ 0.44
SHMT2-225ENST00000556798 IL1BP01584 269 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 CTSLP07711 333 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 ACADMP11310 421 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 P2RY2P41231 377 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 RECQLP46063 649 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-225ENST00000556798 PEX5P50542 639 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 TPMTP51580 245 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 CCNHP51946 323 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-225ENST00000556798 METAP1P53582 386 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 RWDD2BP57060 319 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 RHOAP61586 193 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 ADCY2Q08462 1091 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 CYTH1Q15438 398 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 CST6Q15828 149 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 LPAL2Q16609 132 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 CARD16Q5EG05 197 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 TFDP3Q5H9I0 405 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 AADACL2Q6P093 401 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 PRR23BQ6ZRT6 265 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 RYBPQ8N488 228 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-225ENST00000556798 GRIN3AQ8TCU5 1115 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 CCDC114Q96M63 670 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 DTLQ9NZJ0 730 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 LHX3Q9UBR4 397 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 SARDHQ9UL12 918 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 DMDP11532 3685 aa17.79■□□□□ 0.44
SHMT2-225ENST00000556798 RALGAPA1Q6GYQ0 2036 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 IGHV1OR15-9A0A0B4J2B8 117 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 RNF103O00237 685 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 MCF2LO15068 1137 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 MAFKO60675 156 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 CST8O60676 142 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 DNTTP04053 509 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 GKP32189 559 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 CHRNA3P32297 505 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 GARSP41250 739 aaKnown RBP17.78■□□□□ 0.44
SHMT2-225ENST00000556798 NBL1P41271 181 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 ZNF211Q13398 564 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-225ENST00000556798 SIM2Q14190 667 aaPredicted RBP17.78■□□□□ 0.44
SHMT2-225ENST00000556798 PPP2R5EQ16537 467 aa17.78■□□□□ 0.44
SHMT2-225ENST00000556798 INO80DQ53TQ3 878 aaPredicted RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 270.8 ms