RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 PDFQ9HBH1 243 aa12.6□□□□□ -0.39
SYNE2-214ENST00000554928 TMEM74BQ9NUR3 256 aa12.6□□□□□ -0.39
SYNE2-214ENST00000554928 IMPACTQ9P2X3 320 aa12.6□□□□□ -0.39
SYNE2-214ENST00000554928 TRIM10Q9UDY6 481 aa12.6□□□□□ -0.39
SYNE2-214ENST00000554928 GMEB2Q9UKD1 530 aa12.6□□□□□ -0.39
SYNE2-214ENST00000554928 PPM1HQ9ULR3 514 aa12.6□□□□□ -0.39
SYNE2-214ENST00000554928 WASF2Q9Y6W5 498 aa12.6□□□□□ -0.39
SYNE2-214ENST00000554928 CHD5Q8TDI0 1954 aa12.6□□□□□ -0.39
SYNE2-214ENST00000554928 NUMA1Q14980 2115 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 GVINP1Q7Z2Y8 2422 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 MCF2LO15068 1137 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 BUB1O43683 1085 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 TMCC1O94876 653 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 MAP3K6O95382 1288 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 IL1BP01584 269 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 DNTTP04053 509 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 TNNT1P13805 278 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 COMTP21964 271 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 ITPKAP23677 461 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 MAOBP27338 520 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 MARCKSL1P49006 195 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 DNA2P51530 1060 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 YBEYP58557 167 aaPredicted RBP12.59□□□□□ -0.39
SYNE2-214ENST00000554928 CREB5Q02930 508 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 KRT81Q14533 505 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 ELAVL3Q14576 367 aaKnown RBP12.59□□□□□ -0.39
SYNE2-214ENST00000554928 SF3A2Q15428 464 aaKnown RBP12.59□□□□□ -0.39
SYNE2-214ENST00000554928 CYTH1Q15438 398 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 SPA17Q15506 151 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 ELF2Q15723 593 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 HADHQ16836 314 aaKnown RBP12.59□□□□□ -0.39
SYNE2-214ENST00000554928 PARP15Q460N3 678 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 LPCAT2Q7L5N7 544 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 KIAA2013Q8IYS2 634 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 PQLC3Q8N755 202 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 PCDH19Q8TAB3 1148 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 PIP4K2CQ8TBX8 421 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 GRIN3AQ8TCU5 1115 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 OR8D1Q8WZ84 308 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 ARRDC3Q96B67 414 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 HSPA12BQ96MM6 686 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 NEUROG2Q9H2A3 272 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 FBRSQ9HAH7 460 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 FSCN3Q9NQT6 498 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 RXFP3Q9NSD7 469 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 FBXL12Q9NXK8 326 aa12.59□□□□□ -0.39
SYNE2-214ENST00000554928 FAM186AA6NE01 2351 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 BCLAF3A2AJT9 711 aaKnown RBP12.58□□□□□ -0.4
SYNE2-214ENST00000554928 C3orf70A6NLC5 250 aaPredicted RBP12.58□□□□□ -0.4
SYNE2-214ENST00000554928 DFFAO00273 331 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 INSIG1O15503 277 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 MFSD11O43934 449 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 PRAMEF11O60813 436 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 GJB3O75712 270 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 RNASEH2AO75792 299 aaKnown RBP12.58□□□□□ -0.4
SYNE2-214ENST00000554928 RHOBTB1O94844 696 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 CHRNA3P32297 505 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 ETFBP38117 255 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 MPLP40238 635 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 ARL4AP40617 200 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 ARHGAP25P42331 645 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 NOP2P46087 812 aaKnown RBP12.58□□□□□ -0.4
SYNE2-214ENST00000554928 RGRP47804 291 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 CCNHP51946 323 aaPredicted RBP12.58□□□□□ -0.4
SYNE2-214ENST00000554928 NDST2P52849 883 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 ZNF33AQ06730 810 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 CNTN1Q12860 1018 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 BYSLQ13895 437 aaKnown RBP12.58□□□□□ -0.4
SYNE2-214ENST00000554928 ARSIQ5FYB1 569 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 PLA2G2CQ5R387 149 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 NCBP2-AS2Q69YL0 99 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 SLC36A4Q6YBV0 504 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 HDDC3Q8N4P3 179 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 GANCQ8TET4 914 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 PIGKQ92643 395 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 ZNF419Q96HQ0 510 aaPredicted RBP12.58□□□□□ -0.4
SYNE2-214ENST00000554928 LOXL4Q96JB6 756 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 EXOC2Q96KP1 924 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 NSMCE3Q96MG7 304 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 CALN1Q9BXU9 219 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 GRPEL1Q9HAV7 217 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 SEMA4GQ9NTN9 838 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 LHX3Q9UBR4 397 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.58□□□□□ -0.4
SYNE2-214ENST00000554928 PLXND1Q9Y4D7 1925 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 CFAP54Q96N23 3096 aa12.58□□□□□ -0.4
SYNE2-214ENST00000554928 PTPRZ1P23471 2315 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-214ENST00000554928 MUSKO15146 869 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 RNASEH1O60930 286 aaKnown RBP12.57□□□□□ -0.4
SYNE2-214ENST00000554928 NDUFS2O75306 463 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 LEFTY1O75610 366 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 PEX11BO96011 259 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 KDELR1P24390 212 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 HADHBP55084 474 aaKnown RBP12.57□□□□□ -0.4
SYNE2-214ENST00000554928 ZBTB16Q05516 673 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 SLC20A2Q08357 652 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 LLGL1Q15334 1064 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 TTC31Q49AM3 519 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-214ENST00000554928 ANKRD20A8PQ5CZ79 823 aa12.57□□□□□ -0.4
SYNE2-214ENST00000554928 CARD16Q5EG05 197 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms