RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 NME3Q13232 169 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 C5orf22Q49AR2 442 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 RABGAP1LQ5R372 815 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 HGSNATQ68CP4 663 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 OR6B2Q6IFH4 312 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 NAPEPLDQ6IQ20 393 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-215ENST00000554656 SLC26A9Q7LBE3 791 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 PDZD3Q86UT5 571 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 SLC47A2Q86VL8 602 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 GALNT15Q8N3T1 639 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 SH2D3CQ8N5H7 860 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 TSC1Q92574 1164 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 CRELD1Q96HD1 420 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 CHP1Q99653 195 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 NLRC4Q9NPP4 1024 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 LUC7LQ9NQ29 371 aaKnown RBP10.85□□□□□ -0.67
SHMT2-215ENST00000554656 TMPRSS4Q9NRS4 437 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 PIGVQ9NUD9 493 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 CA5BQ9Y2D0 317 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 FHOD1Q9Y613 1164 aa10.85□□□□□ -0.67
SHMT2-215ENST00000554656 TRPM6Q9BX84 2022 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 PTPRQQ9UMZ3 2332 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3DA0A087WVF3 549 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3IA0A087WXS9 549 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3EA0A087X179 549 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3KA0A087X1G2 549 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 FAM170AA1A519 330 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3FA6NER0 549 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3LB9A6J9 549 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TLR4O00206 839 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 FOXN3O00409 490 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 SNAP91O60641 907 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 PAGE1O75459 146 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 MT-CO1P00395 513 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3HP0C7X1 549 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 SLC2A3P11169 496 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 RXRGP48443 463 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 SULT2A1Q06520 285 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 SFSWAPQ12872 951 aaKnown RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 RAPGEF1Q13905 1077 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 DLG2Q15700 870 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 ASIC2Q16515 512 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 INAVAQ3KP66 663 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 SOWAHCQ53LP3 525 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 ALFQ53S48 1182 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 EFHC1Q5JVL4 640 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3GQ6DHY5 549 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3CQ6IPX1 549 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TRNP1Q6NT89 227 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 NYAP1Q6ZVC0 841 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TRIM69Q86WT6 500 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 REXO1L1PQ8IX06 675 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D3Q8IZP1 549 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 EID2Q8N6I1 236 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 PIP4K2CQ8TBX8 421 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 HNRNPLLQ8WVV9 542 aaKnown RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 OR8D1Q8WZ84 308 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 RNF34Q969K3 372 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 CNDP2Q96KP4 475 aaKnown RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 CCDC42Q96M95 316 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 NPY6RQ99463 290 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 NHEJ1Q9H9Q4 299 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 GDF3Q9NR23 364 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 SLC12A6Q9UHW9 1150 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 DNAJC12Q9UKB3 198 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 PPM1HQ9ULR3 514 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 TBC1D30Q9Y2I9 924 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 COL27A1Q8IZC6 1860 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-215ENST00000554656 ASXL3Q9C0F0 2248 aa10.84□□□□□ -0.67
SHMT2-215ENST00000554656 F8VZ95 297 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 K7ERQ8 282 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 M0QYT0 321 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 MCF2LO15068 1137 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 SLC7A4O43246 635 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 SMAD6O43541 496 aaKnown RBP10.83□□□□□ -0.68
SHMT2-215ENST00000554656 LDOC1O95751 146 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-215ENST00000554656 ITGAVP06756 1048 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 SRCP12931 536 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 NOS2P35228 1153 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 SOX5P35711 763 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 NNMTP40261 264 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 CXCR3P49682 368 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 SLC6A3Q01959 620 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 KLHL30Q0D2K2 578 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 ASTE1Q2TB18 679 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-215ENST00000554656 ACCSLQ4AC99 568 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 PIP5KL1Q5T9C9 394 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 IRF2BP2Q7Z5L9 587 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 VPS36Q86VN1 386 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 FAM71AQ8IYT1 594 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 MFSD2AQ8NA29 543 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 NT5C3BQ969T7 300 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 ARRDC3Q96B67 414 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 BBC3Q96PG8 261 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-215ENST00000554656 SIK2Q9H0K1 926 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 KDM4CQ9H3R0 1056 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 HAUS4Q9H6D7 363 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 ERVMER34-1Q9H9K5 563 aa10.83□□□□□ -0.68
SHMT2-215ENST00000554656 SCUBE2Q9NQ36 999 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms