RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 SLC28A3Q9HAS3 691 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 NGRNQ9NPE2 291 aaKnown RBP6.62□□□□□ -1.35
SCFD1-212ENST00000554486 ACSS2Q9NR19 701 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 TLR9Q9NR96 1032 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 MRPL17Q9NRX2 175 aaKnown RBP6.62□□□□□ -1.35
SCFD1-212ENST00000554486 TMEM30AQ9NV96 361 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 SPATA6Q9NWH7 488 aaPredicted RBP6.62□□□□□ -1.35
SCFD1-212ENST00000554486 FNIP2Q9P278 1114 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 PUF60Q9UHX1 559 aaKnown RBP6.62□□□□□ -1.35
SCFD1-212ENST00000554486 KIAA1257Q9ULG3 409 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 NENFQ9UMX5 172 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 BZW2Q9Y6E2 419 aaKnown RBP6.62□□□□□ -1.35
SCFD1-212ENST00000554486 REV3LO60673 3130 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 GREB1Q4ZG55 1949 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 PATJQ8NI35 1801 aa6.62□□□□□ -1.35
SCFD1-212ENST00000554486 PRRC2BQ5JSZ5 2229 aaKnown RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 DOCK6Q96HP0 2047 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ZNF638Q14966 1978 aaKnown RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 A0A087X0T9 212 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 WDR27A2RRH5 827 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 MTMR11A4FU01 709 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ZNF263O14978 683 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 TEX28O15482 410 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 MED7O43513 233 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 BRINP1O60477 761 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 LPXNO60711 386 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 BEST1O76090 585 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CSPG5O95196 566 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CYP1A1P04798 512 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ENO2P09104 434 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CNPP09543 421 aaKnown RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 FAM228BP0C875 321 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 TNFAIP3P21580 790 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ANXA13P27216 316 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ADORA2BP29275 332 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CDH5P33151 784 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 OR1D2P34982 312 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 FNTBP49356 437 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CACNA2D1P54289 1103 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ARPP19P56211 112 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 PHC1P78364 1004 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ROR1Q01973 937 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 STILQ15468 1287 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 GOLGA7BQ2TAP0 167 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ATP13A4Q4VNC1 1196 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 SLC39A12Q504Y0 691 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 PLPP4Q5VZY2 271 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 DNAAF5Q86Y56 855 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 TMTC1Q8IUR5 882 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 PASD1Q8IV76 773 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 DCP1BQ8IZD4 617 aaKnown RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 MRPL43Q8N983 215 aaKnown RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ANKRD52Q8NB46 1076 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ATAD1Q8NBU5 361 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CCDC112Q8NEF3 446 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ZMIZ2Q8NF64 920 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 UBA3Q8TBC4 463 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CYFIP2Q96F07 1278 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 KLHL5Q96PQ7 755 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 HNRNPABQ99729 332 aaKnown RBP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 SMOQ99835 787 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 TCF25Q9BQ70 676 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 RHOBTB2Q9BYZ6 727 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 TRIM8Q9BZR9 551 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 LHX5Q9H2C1 402 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 SEMA4AQ9H3S1 761 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ENTPD7Q9NQZ7 604 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.61□□□□□ -1.35
SCFD1-212ENST00000554486 TAS2R14Q9NYV8 317 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CYTH4Q9UIA0 394 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 TSPAN16Q9UKR8 245 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 CDY1Q9Y6F8 540 aa6.61□□□□□ -1.35
SCFD1-212ENST00000554486 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-212ENST00000554486 FAM170AA1A519 330 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 HIDE1A8MVS5 230 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 M0QYV0 167 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 TULP2O00295 520 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 ABLIM3O94929 683 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 LCA5LO95447 670 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 SEC24AO95486 1093 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 LSM8O95777 96 aaKnown RBP6.6□□□□□ -1.35
SCFD1-212ENST00000554486 CYP17A1P05093 508 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 UNGP13051 313 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-212ENST00000554486 BDNFP23560 247 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 CYP2F1P24903 491 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 DEKP35659 375 aaKnown RBP6.6□□□□□ -1.35
SCFD1-212ENST00000554486 GPD2P43304 727 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 BCAT1P54687 386 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 NOMO3P69849 1222 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 CREMQ03060 361 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 BST2Q10589 180 aaKnown RBP6.6□□□□□ -1.35
SCFD1-212ENST00000554486 SMARCB1Q12824 385 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 PTP4A2Q12974 167 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 GPR17Q13304 367 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 SMC1AQ14683 1233 aaKnown RBP6.6□□□□□ -1.35
SCFD1-212ENST00000554486 MAPRE1Q15691 268 aaKnown RBP6.6□□□□□ -1.35
SCFD1-212ENST00000554486 SLC18A3Q16572 532 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 NFE2Q16621 373 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-212ENST00000554486 SKIDA1Q1XH10 827 aa6.6□□□□□ -1.35
SCFD1-212ENST00000554486 PRR31Q5SQ13 230 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms